Todd J. Treangen

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Sergey KorenAssociate Investigator, NHGRI/NIHEmail yang diverifikasi di nih.gov
Adam M. PhillippyDirector, Center for Genomics and Data Science Research, NHGRI, NIHEmail yang diverifikasi di nih.gov
Mihai PopProfessor of Computer Science, University of Maryland, College ParkEmail yang diverifikasi di umd.edu
Ryan Leo ElworthPostdoctoral Scientist, Rice UniversityEmail yang diverifikasi di rice.edu
Nicolae SapovalPostdoctoral Researcher, Department of Computer Science, Rice UniversityEmail yang diverifikasi di rice.edu
Brian OndovYale School of MedicineEmail yang diverifikasi di yale.edu
Nicholas BergmanDirector, National Biodefense Analysis and Countermeasures CenterEmail yang diverifikasi di st.dhs.gov
Michael NuteRice UniversityEmail yang diverifikasi di rice.edu
Steven SalzbergBloomberg Distinguished Professor, Johns Hopkins UniversityEmail yang diverifikasi di jhu.edu
Sonia VillapolHouston Methodist Research InstituteEmail yang diverifikasi di houstonmethodist.org
Bryce KilleRice UniversityEmail yang diverifikasi di rice.edu
Advait BalajiRice UniversityEmail yang diverifikasi di rice.edu
Kristen D. CurryPhD student in Computer Science, Rice UniversityEmail yang diverifikasi di rice.edu
Eduardo RochaCNRS, Institut PasteurEmail yang diverifikasi di pasteur.fr
Daniel D SommerNational Biodefense Analysis and Countermeasures CenterEmail yang diverifikasi di nbacc.dhs.gov
Lauren B. StadlerRice UniversityEmail yang diverifikasi di rice.edu
Yunxi LiuDepartment of Computer Science, Rice UniversityEmail yang diverifikasi di rice.edu
Aaron DarlingIndependentEmail yang diverifikasi di illumina.com
Krista (Fritz) TernusSignature Science, LLCEmail yang diverifikasi di signaturescience.com
Páll MelstedProfessor of Computer Science, University of IcelandEmail yang diverifikasi di hi.is

Ikuti

Todd J. Treangen

Associate Professor, Department of Computer Science, Rice University

Email yang diverifikasi di rice.edu - Beranda

Bioinformatics Computational Genomics Metagenomics


Judul Urutkan menurut kutipan Urutkan menurut tahun Urutkan menurut judul	Dikutip oleh Dikutip oleh	Tahun
Structure, function and diversity of the healthy human microbiome nature 486 (7402), 207-214, 2012	10901	2012
Mash: fast genome and metagenome distance estimation using MinHash BD Ondov, TJ Treangen, P Melsted, AB Mallonee, NH Bergman, S Koren, ... Genome biology 17, 1-14, 2016	2823	2016
A framework for human microbiome research nature 486 (7402), 215-221, 2012	2507	2012
Repetitive DNA and next-generation sequencing: computational challenges and solutions TJ Treangen, SL Salzberg Nature Reviews Genetics, 2011	2126	2011
The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes TJ Treangen, BD Ondov, S Koren, AM Phillippy Genome biology 15, 1-15, 2014	1632	2014
GAGE: A critical evaluation of genome assemblies and assembly algorithms SL Salzberg, AM Phillippy, A Zimin, D Puiu, T Magoc, S Koren, ... Genome research 22 (3), 557-567, 2012	902	2012
Structure, function and diversity of the healthy human microbiome HMP Consortium nature 486 (7402), 207-214, 2012	667	2012
Horizontal transfer, not duplication, drives the expansion of protein families in prokaryotes TJ Treangen, EPC Rocha PLoS genetics 7 (1), e1001284, 2011	591	2011
Deep sequencing of the oral microbiome reveals signatures of periodontal disease B Liu, LL Faller, N Klitgord, V Mazumdar, M Ghodsi, DD Sommer, ... PloS one 7 (6), e37919, 2012	490	2012
Comprehensive multi-omics analysis reveals mitochondrial stress as a central biological hub for spaceflight impact WA da Silveira, H Fazelinia, SB Rosenthal, EC Laiakis, MS Kim, ... Cell 183 (5), 1185-1201. e20, 2020	284	2020
Accurate and fast estimation of taxonomic profiles from metagenomic shotgun sequences B Liu, T Gibbons, M Ghodsi, T Treangen, M Pop BMC Genomics 12 (Suppl 2), S4, 2011	265	2011
Next generation sequence assembly with AMOS TJ Treangen, DD Sommer, FE Angly, S Koren, M Pop Current Protocols in Bioinformatics 33 (1), 11.8. 1-11.8. 18, 2011	264	2011
Current progress and open challenges for applying deep learning across the biosciences N Sapoval, A Aghazadeh, MG Nute, DA Antunes, A Balaji, R Baraniuk, ... Nature Communications 13 (1), 1728, 2022	259	2022
MetAMOS: a modular and open source metagenomic assembly and analysis pipeline TJ Treangen, S Koren, DD Sommer, B Liu, I Astrovskaya, B Ondov, ... Genome Biology 14 (1), R2, 2013	242	2013
A new rhesus macaque assembly and annotation for next-generation sequencing analyses AV Zimin, AS Cornish, MD Maudhoo, RM Gibbs, X Zhang, S Pandey, ... Biology direct 9, 1-15, 2014	194	2014
Genesis, effects and fates of repeats in prokaryotic genomes TJ Treangen, AL Abraham, M Touchon, EPC Rocha FEMS microbiology reviews 33 (3), 539-571, 2009	184	2009
Bambus 2: scaffolding metagenomes S Koren, TJ Treangen, M Pop Bioinformatics 27 (21), 2964-2971, 2011	175	2011
RefSeq database growth influences the accuracy of k-mer-based lowest common ancestor species identification DJ Nasko, S Koren, AM Phillippy, TJ Treangen Genome biology 19, 1-10, 2018	169	2018
Emu: species-level microbial community profiling of full-length 16S rRNA Oxford Nanopore sequencing data KD Curry, Q Wang, MG Nute, A Tyshaieva, E Reeves, S Soriano, Q Wu, ... Nature methods 19 (7), 845-853, 2022	165	2022
Metagenomic assembly through the lens of validation: recent advances in assessing and improving the quality of genomes assembled from metagenomes ND Olson, TJ Treangen, CM Hill, V Cepeda-Espinoza, J Ghurye, S Koren, ... Briefings in bioinformatics 20 (4), 1140-1150, 2019	161	2019

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