| An integrated encyclopedia of DNA elements in the human genome ENCODE Project Consortium Nature 489 (7414), 57, 2012 | 17543 | 2012 |
| ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia SG Landt, GK Marinov, A Kundaje, P Kheradpour, F Pauli, S Batzoglou, ... Genome research 22 (9), 1813-1831, 2012 | 2342 | 2012 |
| Architecture of the human regulatory network derived from ENCODE data MB Gerstein, A Kundaje, M Hariharan, SG Landt, KK Yan, C Cheng, ... Nature 489 (7414), 91-100, 2012 | 1724 | 2012 |
| Expanded encyclopaedias of DNA elements in the human and mouse genomes JE Moore, MJ Purcaro, HE Pratt, CB Epstein, N Shoresh, J Adrian, T Kawli, ... Nature 583 (7818), 699-710, 2020 | 1566 | 2020 |
| A user's guide to the encyclopedia of DNA elements (ENCODE) RM Myers, J Stamatoyannopoulos, M Snyder, I Dunham, RC Hardison, ... PLoS Biology 9 (4), e1001046, 2011 | 1498 | 2011 |
| A validated regulatory network for Th17 cell specification M Ciofani, A Madar, C Galan, ML Sellars, K Mace, F Pauli, A Agarwal, ... Cell 151 (2), 289-303, 2012 | 1334 | 2012 |
| Dynamic DNA methylation across diverse human cell lines and tissues KE Varley, J Gertz, KM Bowling, SL Parker, TE Reddy, F Pauli-Behn, ... Genome research 23 (3), 555-567, 2013 | 812 | 2013 |
| Widespread plasticity in CTCF occupancy linked to DNA methylation H Wang, MT Maurano, H Qu, KE Varley, J Gertz, F Pauli, K Lee, ... Genome research 22 (9), 1680-1688, 2012 | 687 | 2012 |
| Genomic determination of the glucocorticoid response reveals unexpected mechanisms of gene regulation TE Reddy, F Pauli, RO Sprouse, NF Neff, KM Newberry, MJ Garabedian, ... Genome research 19 (12), 2163-2171, 2009 | 625 | 2009 |
| Analysis of DNA methylation in a three-generation family reveals widespread genetic influence on epigenetic regulation J Gertz, KE Varley, TE Reddy, KM Bowling, F Pauli, SL Parker, KS Kucera, ... PLoS genetics 7 (8), e1002228, 2011 | 351 | 2011 |
| Effects of sequence variation on differential allelic transcription factor occupancy and gene expression TE Reddy, J Gertz, F Pauli, KS Kucera, KE Varley, KM Newberry, ... Genome research 22 (5), 860-869, 2012 | 190 | 2012 |
| Chromosomal clustering and GATA transcriptional regulation of intestine-expressed genes in C. elegans F Pauli, Y Liu, YA Kim, PJ Chen, SK Kim Oxford University Press for The Company of Biologists Limited 133 (2), 287-295, 2006 | 174 | 2006 |
| Role of CCCTC binding factor (CTCF) and cohesin in the generation of single-cell diversity of protocadherin-α gene expression K Monahan, ND Rudnick, PD Kehayova, F Pauli, KM Newberry, ... Proceedings of the National Academy of Sciences 109 (23), 9125-9130, 2012 | 168 | 2012 |
| Intricate interplay between astrocytes and motor neurons in ALS HP Phatnani, P Guarnieri, BA Friedman, MA Carrasco, M Muratet, ... Proceedings of the National Academy of Sciences 110 (8), E756-E765, 2013 | 162 | 2013 |
| A small family of LLS1-related non-heme oxygenases in plants with an origin amongst oxygenic photosynthesizers J Gray, E Wardzala, M Yang, S Reinbothe, S Haller, F Pauli Plant molecular biology 54 (1), 39-54, 2004 | 103 | 2004 |
| Dynamic microRNA gene transcription and processing during T cell development FF Kirigin, K Lindstedt, M Sellars, M Ciofani, SL Low, L Jones, F Bell, ... The Journal of Immunology 188 (7), 3257-3267, 2012 | 100 | 2012 |
| Evidence for multiple roles for grainyhead-like 2 in the establishment and maintenance of human mucociliary airway epithelium X Gao, CM Vockley, F Pauli, KM Newberry, Y Xue, SH Randell, TE Reddy, ... Proceedings of the National Academy of Sciences 110 (23), 9356-9361, 2013 | 98 | 2013 |
| A toolbox of immunoprecipitation-grade monoclonal antibodies to human transcription factors A Venkataraman, K Yang, J Irizarry, M Mackiewicz, P Mita, Z Kuang, ... Nature methods 15 (5), 330-338, 2018 | 63 | 2018 |
| SON and its alternatively spliced isoforms control MLL complex-mediated H3K4me3 and transcription of leukemia-associated genes JH Kim, MC Baddoo, EY Park, JK Stone, H Park, TW Butler, G Huang, ... Molecular cell 61 (6), 859-873, 2016 | 58 | 2016 |
| Allele-specific distribution of RNA polymerase II on female X chromosomes KS Kucera, TE Reddy, F Pauli, J Gertz, JE Logan, RM Myers, HF Willard Human molecular genetics 20 (20), 3964-3973, 2011 | 44 | 2011 |
