| Identification of Functional Elements and Regulatory Circuits by Drosophila modENCODE modENCODE Consortium, S Roy, J Ernst, PV Kharchenko, P Kheradpour, ... Science 330 (6012), 1787-1797, 2010 | 1115 | 2010 |
| Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures A Stark, MF Lin, P Kheradpour, JS Pedersen, L Parts, JW Carlson, ... Nature 450 (7167), 219, 2007 | 723 | 2007 |
| Calorie restriction and SIRT3 trigger global reprogramming of the mitochondrial protein acetylome AS Hebert, KE Dittenhafer-Reed, W Yu, DJ Bailey, ES Selen, ... Molecular cell 49 (1), 186-199, 2013 | 703 | 2013 |
| Comparative functional genomics of the fission yeasts N Rhind, Z Chen, M Yassour, DA Thompson, BJ Haas, N Habib, ... Science 332 (6032), 930-936, 2011 | 551 | 2011 |
| Reliable prediction of regulator targets using 12 Drosophila genomes P Kheradpour, A Stark, S Roy, M Kellis Genome research 17 (12), 1919-1931, 2007 | 219 | 2007 |
| SIRT3 mediates multi-tissue coupling for metabolic fuel switching KE Dittenhafer-Reed, AL Richards, J Fan, MJ Smallegan, AF Siahpirani, ... Cell metabolism 21 (4), 637-646, 2015 | 196 | 2015 |
| Characterization of differentiated quiescent and nonquiescent cells in yeast stationary-phase cultures AD Aragon, AL Rodriguez, O Meirelles, S Roy, GS Davidson, PH Tapia, ... Molecular biology of the cell 19 (3), 1271-1280, 2008 | 192 | 2008 |
| Comparative analysis of gene regulatory networks: from network reconstruction to evolution D Thompson, A Regev, S Roy Annual review of cell and developmental biology 31 (1), 399-428, 2015 | 186 | 2015 |
| Deep sequencing of the Medicago truncatula root transcriptome reveals a massive and early interaction between nodulation factor and ethylene signals E Larrainzar, BK Riely, SC Kim, N Carrasquilla-Garcia, HJ Yu, HJ Hwang, ... Plant Physiology 169 (1), 233-265, 2015 | 156 | 2015 |
| Predictive regulatory models in Drosophila melanogaster by integrative inference of transcriptional networks D Marbach, S Roy, F Ay, PE Meyer, R Candeias, T Kahveci, CA Bristow, ... Genome research 22 (7), 1334-1349, 2012 | 147 | 2012 |
| A predictive modeling approach for cell line-specific long-range regulatory interactions S Roy, AF Siahpirani, D Chasman, S Knaack, F Ay, R Stewart, M Wilson, ... Nucleic acids research 43 (18), 8694-8712, 2015 | 144 | 2015 |
| A predictive modeling approach for cell line-specific long-range regulatory interactions S Roy, AF Siahpirani, D Chasman, S Knaack, F Ay, R Stewart, M Wilson, ... Nucleic acids research 43 (18), 8694-8712, 2015 | 144 | 2015 |
| A proteomic atlas of the legume Medicago truncatula and its nitrogen-fixing endosymbiont Sinorhizobium meliloti H Marx, CE Minogue, D Jayaraman, AL Richards, NW Kwiecien, ... Nature biotechnology 34 (11), 1198-1205, 2016 | 142 | 2016 |
| Multivariate curve resolution of time course microarray data PD Wentzell, TK Karakach, S Roy, MJ Martinez, CP Allen, ... BMC bioinformatics 7, 1-19, 2006 | 126 | 2006 |
| The proteomics of quiescent and nonquiescent cell differentiation in yeast stationary-phase cultures GS Davidson, RM Joe, S Roy, O Meirelles, CP Allen, MR Wilson, ... Molecular biology of the cell 22 (7), 988-998, 2011 | 124 | 2011 |
| The NIH somatic cell genome editing program K Saha, EJ Sontheimer, PJ Brooks, MR Dwinell, CA Gersbach, DR Liu, ... Nature 592 (7853), 195-204, 2021 | 116 | 2021 |
| Exploiting amino acid composition for predicting protein-protein interactions S Roy, D Martinez, H Platero, T Lane, M Werner-Washburne PloS one 4 (11), e7813, 2009 | 107 | 2009 |
| Integrated module and gene-specific regulatory inference implicates upstream signaling networks S Roy, S Lagree, Z Hou, JA Thomson, R Stewart, AP Gasch PLoS computational biology 9 (10), e1003252, 2013 | 96 | 2013 |
| Evolutionary principles of modular gene regulation in yeasts DA Thompson, S Roy, M Chan, MP Styczynsky, J Pfiffner, C French, ... Elife 2, e00603, 2013 | 95 | 2013 |
| Network-based approaches for analysis of complex biological systems D Chasman, AF Siahpirani, S Roy Current opinion in biotechnology 39, 157-166, 2016 | 93 | 2016 |
