| Evidence for transmission of COVID-19 prior to symptom onset LC Tindale, JE Stockdale, M Coombe, ES Garlock, WYV Lau, M Saraswat, ... Elife 9, e57149, 2020 | 571* | 2020 |
| Interpreting Expression Data with Metabolic Flux Models: Predicting Mycobacterium tuberculosis Mycolic Acid Production C Colijn, A Brandes, J Zucker, DS Lun, B Weiner, MR Farhat, TY Cheng, ... PLoS computational biology 5 (8), e1000489, 2009 | 485 | 2009 |
| The origins and potential future of SARS-CoV-2 variants of concern in the evolving COVID-19 pandemic SP Otto, T Day, J Arino, C Colijn, J Dushoff, M Li, S Mechai, ... Current Biology 31 (14), R918-R929, 2021 | 385 | 2021 |
| A mathematical model of hematopoiesis—I. Periodic chronic myelogenous leukemia C Colijn, MC Mackey Journal of Theoretical Biology 237 (2), 117-132, 2005 | 361 | 2005 |
| Effects of smoking and solid-fuel use on COPD, lung cancer, and tuberculosis in China: a time-based, multiple risk factor, modelling study HH Lin, M Murray, T Cohen, C Colijn, M Ezzati The Lancet 372 (9648), 1473-1483, 2008 | 344 | 2008 |
| Genomic infectious disease epidemiology in partially sampled and ongoing outbreaks X Didelot, C Fraser, J Gardy, C Colijn Molecular biology and evolution 34 (4), 997-1007, 2017 | 279 | 2017 |
| Antimicrobials: a global alliance for optimizing their rational use in intra-abdominal infections (AGORA) M Sartelli, DG Weber, E Ruppé, M Bassetti, BJ Wright, L Ansaloni, ... World journal of emergency surgery 11, 1-32, 2016 | 255 | 2016 |
| Bayesian inference of infectious disease transmission from whole-genome sequence data X Didelot, J Gardy, C Colijn Molecular biology and evolution 31 (7), 1869-1879, 2014 | 242 | 2014 |
| Mixed-strain Mycobacterium tuberculosis infections and the implications for tuberculosis treatment and control T Cohen, PD van Helden, D Wilson, C Colijn, MM McLaughlin, I Abubakar, ... Clinical microbiology reviews 25 (4), 708-719, 2012 | 237 | 2012 |
| Whole-genome sequencing for routine pathogen surveillance in public health: a population snapshot of invasive Staphylococcus aureus in Europe DM Aanensen, EJ Feil, MTG Holden, J Dordel, CA Yeats, A Fedosejev, ... MBio 7 (3), 10.1128/mbio. 00444-16, 2016 | 215 | 2016 |
| Exogenous re-infection and the dynamics of tuberculosis epidemics: local effects in a network model of transmission T Cohen, C Colijn, B Finklea, M Murray Journal of the Royal Society Interface 4 (14), 523-531, 2007 | 192 | 2007 |
| No coexistence for free: neutral null models for multistrain pathogens M Lipsitch, C Colijn, T Cohen, WP Hanage, C Fraser Epidemics 1 (1), 2-13, 2009 | 171 | 2009 |
| A mathematical model of hematopoiesis: II. Cyclical neutropenia C Colijn, MC Mackey Journal of theoretical biology 237 (2), 133-146, 2005 | 170 | 2005 |
| treespace: Statistical exploration of landscapes of phylogenetic trees T Jombart, M Kendall, J Almagro‐Garcia, C Colijn Molecular ecology resources 17 (6), 1385-1392, 2017 | 168 | 2017 |
| Interpreting whole genome sequencing for investigating tuberculosis transmission: a systematic review HA Hatherell, C Colijn, HR Stagg, C Jackson, JR Winter, I Abubakar BMC medicine 14, 1-13, 2016 | 168 | 2016 |
| Beyond the SNP threshold: identifying outbreak clusters using inferred transmissions J Stimson, J Gardy, B Mathema, V Crudu, T Cohen, C Colijn Molecular biology and evolution 36 (3), 587-603, 2019 | 151 | 2019 |
| Mapping phylogenetic trees to reveal distinct patterns of evolution M Kendall, C Colijn Molecular biology and evolution 33 (10), 2735-2743, 2016 | 143 | 2016 |
| Simultaneous inference of phylogenetic and transmission trees in infectious disease outbreaks D Klinkenberg, JA Backer, X Didelot, C Colijn, J Wallinga PLoS computational biology 13 (5), e1005495, 2017 | 131 | 2017 |
| Phylogenetic tree shapes resolve disease transmission patterns C Colijn, J Gardy Evolution, medicine, and public health 2014 (1), 96-108, 2014 | 120 | 2014 |
| Quantifying the impact of COVID-19 control measures using a Bayesian model of physical distancing SC Anderson, AM Edwards, M Yerlanov, N Mulberry, JE Stockdale, ... PLoS computational biology 16 (12), e1008274, 2020 | 115 | 2020 |
Ted CohenDepartment of Epidemiology of Microbial Diseases, Yale School of Public HealthEmail verificata su yale.edu