| A survey of error-correction methods for next-generation sequencing X Yang, SP Chockalingam, S Aluru Briefings in bioinformatics 14 (1), 56-66, 2013 | 335 | 2013 |
| A greedy alignment-free distance estimator for phylogenetic inference SV Thankachan, SP Chockalingam, Y Liu, A Krishnan, S Aluru BMC bioinformatics 18, 1-8, 2017 | 43 | 2017 |
| ALFRED: a practical method for alignment-free distance computation SV Thankachan, SP Chockalingam, Y Liu, A Apostolico, S Aluru Journal of Computational Biology 23 (6), 452-460, 2016 | 32 | 2016 |
| Algorithmic framework for approximate matching under bounded edits with applications to sequence analysis SV Thankachan, C Aluru, SP Chockalingam, S Aluru Research in Computational Molecular Biology: 22nd Annual International …, 2018 | 29 | 2018 |
| A parallel framework for constraint-based Bayesian network learning via Markov blanket discovery A Srivastava, SP Chockalingam, S Aluru IEEE Transactions on Parallel and Distributed Systems 34 (6), 1699-1715, 2023 | 21 | 2023 |
| EnGRaiN: a supervised ensemble learning method for recovery of large-scale gene regulatory networks M Aluru, H Shrivastava, SP Chockalingam, S Shivakumar, S Aluru Bioinformatics 38 (5), 1312-1319, 2022 | 21 | 2022 |
| Parallel bayesian network structure learning for genome-scale gene networks S Misra, M Vasimuddin, K Pamnany, SP Chockalingam, Y Dong, M Xie, ... SC'14: Proceedings of the International Conference for High Performance …, 2014 | 18 | 2014 |
| A parallel algorithm for spectrum-based short read error correction AR Shah, S Chockalingam, S Aluru 2012 IEEE 26th International Parallel and Distributed Processing Symposium …, 2012 | 16 | 2012 |
| Microarray data processing techniques for genome-scale network inference from large public repositories S Chockalingam, M Aluru, S Aluru Microarrays 5 (3), 23, 2016 | 15 | 2016 |
| Efficient detection of viral transmissions with next-generation sequencing data I Rytsareva, DS Campo, Y Zheng, S Sims, SV Thankachan, C Tetik, ... BMC genomics 18, 1-7, 2017 | 13 | 2017 |
| A parallel algorithm for Bayesian network inference using arithmetic circuits M Vasimuddin, SP Chockalingam, S Aluru 2018 IEEE International Parallel and Distributed Processing Symposium (IPDPS …, 2018 | 8 | 2018 |
| Distributed memory partitioning of high-throughput sequencing datasets for enabling parallel genomics analyses N Jammula, SP Chockalingam, S Aluru Proceedings of the 8th ACM International Conference on Bioinformatics …, 2017 | 6 | 2017 |
| Parallel Read Error Correction for Big Genomic Datasets N Jammula, S Chockalingam, S Aluru 2015 IEEE 22nd International Conference on High Performance Computing (HiPC …, 2015 | 5 | 2015 |
| Loss of immune cell identity with age inferred from large atlases of single cell transcriptomes E Connolly, T Pan, M Aluru, S Chockalingam, V Dhere, G Gibson Aging Cell 23 (12), e14306, 2024 | 4 | 2024 |
| Reverse engineering gene networks: a comparative study at genome-scale SP Chockalingam, M Aluru, H Guo, Y Yin, S Aluru Proceedings of the 8th ACM international conference on bioinformatics …, 2017 | 4 | 2017 |
| An efficient algorithm for finding all pairs k-mismatch maximal common substrings SV Thankachan, SP Chockalingam, S Aluru International Symposium on Bioinformatics Research and Applications, 3-14, 2016 | 4 | 2016 |
| An alignment-free heuristic for fast sequence comparisons with applications to phylogeny reconstruction SP Chockalingam, J Pannu, S Hooshmand, SV Thankachan, S Aluru BMC bioinformatics 21 (6), 1-12, 2020 | 3 | 2020 |
| A Parallel Algorithm for Finding All Pairs κ-Mismatch Maximal Common Substrings SP Chockalingam, SV Thankachan, S Aluru SC'16: Proceedings of the International Conference for High Performance …, 2016 | 3 | 2016 |
| Efficient detection of viral transmission with threshold-based methods I Rytsareva, DS Campo, Y Zheng, S Sims, C Tetik, J Chirag, ... 2015 IEEE 5th International Conference on Computational Advances in Bio and …, 2015 | 3 | 2015 |
| MCPNet: a parallel maximum capacity-based genome-scale gene network construction framework TC Pan, SP Chockalingam, M Aluru, S Aluru Bioinformatics 39 (6), btad373, 2023 | 2 | 2023 |
Srinivas AluruRegents' Professor and Senior Associate Dean, College of Computing, Georgia TechEmail verificata su cc.gatech.edu