| Low rank matrix factorization algorithm based on multi-graph regularization for detecting drug-disease association C Ai, H Yang, Y Ding, J Tang, F Guo IEEE/ACM Transactions on Computational Biology and Bioinformatics 20 (5 …, 2023 | 31 | 2023 |
| A multi-layer multi-kernel neural network for determining associations between non-coding RNAs and diseases C Ai, H Yang, Y Ding, J Tang, F Guo Neurocomputing 493, 91-105, 2022 | 17 | 2022 |
| Sparse regularized joint projection model for identifying associations of non-coding RNAs and human diseases P Li, P Tiwari, J Xu, Y Qian, C Ai, Y Ding, F Guo Knowledge-Based Systems 258, 110044, 2022 | 15 | 2022 |
| Microbe-bridged disease-metabolite associations identification by heterogeneous graph fusion J Feng, S Wu, H Yang, C Ai, J Qiao, J Xu, F Guo Briefings in Bioinformatics 23 (6), bbac423, 2022 | 15 | 2022 |
| Identification of dna n4-methylcytosine sites via multiview kernel sparse representation model C Ai, P Tiwari, H Yang, Y Ding, J Tang, F Guo IEEE Transactions on Artificial Intelligence 4 (5), 1236-1245, 2022 | 10 | 2022 |
| MTMol-GPT: De novo multi-target molecular generation with transformer-based generative adversarial imitation learning C Ai, H Yang, X Liu, R Dong, Y Ding, F Guo PLOS Computational Biology 20 (6), e1012229, 2024 | 8 | 2024 |
| MVML-MPI: Multi-View Multi-Label Learning for Metabolic Pathway Inference X Liu, H Yang, C Ai, Y Ding, F Guo, J Tang Briefings in Bioinformatics 24 (6), bbad393, 2023 | 8 | 2023 |
| DeepBLI: a transferable multichannel model for detecting β-lactamase-inhibitor interaction R Dong, H Yang, C Ai, G Duan, J Wang, F Guo Journal of Chemical Information and Modeling 62 (22), 5830-5840, 2022 | 6 | 2022 |
| Deep learning-driven automatic reconstruction of genome-scale metabolic networks X Liu, H Yang, C Ai, Y Ding, J Tang, F Guo | 1 | 2023 |
| A generalizable framework for unlocking missing reactions in genome-scale metabolic networks using deep learning X Liu, H Yang, C Ai, R Dong, Y Ding, Q Yuan, J Tang, F Guo arXiv preprint arXiv:2409.13259, 2024 | | 2024 |
| RetroCaptioner: beyond attention in end-to-end retrosynthesis transformer via contrastively captioned learnable graph representation X Liu, C Ai, H Yang, R Dong, J Tang, S Zheng, F Guo Bioinformatics 40 (9), btae561, 2024 | | 2024 |
