| The emerging role of systems biology for engineering protein production in CHO cells CC Kuo, AWT Chiang, I Shamie, M Samoudi, JM Gutierrez, NE Lewis Current Opinion in Biotechnology 51, 64-69, 2018 | 111 | 2018 |
| Cellular and neurochemical basis of sleep stages in the thalamocortical network GP Krishnan, S Chauvette, I Shamie, S Soltani, I Timofeev, SS Cash, ... Elife 5, e18607, 2016 | 93 | 2016 |
| Replay of large-scale spatio-temporal patterns from waking during subsequent NREM sleep in human cortex X Jiang, I Shamie, W K. Doyle, D Friedman, P Dugan, O Devinsky, ... Scientific reports 7 (1), 17380, 2017 | 55 | 2017 |
| Ptpn6 inhibits caspase-8-and Ripk3/Mlkl-dependent inflammation M Speir, CJ Nowell, AA Chen, JA O’Donnell, IS Shamie, PR Lakin, ... Nature immunology 21 (1), 54-64, 2020 | 51 | 2020 |
| Reduced apoptosis in Chinese hamster ovary cells via optimized CRISPR interference K Xiong, KF Marquart, KJ la Cour Karottki, S Li, I Shamie, JS Lee, ... Biotechnology and bioengineering 116 (7), 1813-1819, 2019 | 51 | 2019 |
| Immune response to intravenous immunoglobulin in patients with Kawasaki disease and MIS-C YP Zhu, I Shamie, JC Lee, CJ Nowell, W Peng, S Angulo, LNN Le, Y Liu, ... The Journal of clinical investigation 131 (20), 2021 | 50 | 2021 |
| Awakening dormant glycosyltransferases in CHO cells with CRISPRa KJC Karottki, H Hefzi, K Xiong, I Shamie, AH Hansen, S Li, LE Pedersen, ... Biotechnology and bioengineering 117 (2), 593-598, 2020 | 43 | 2020 |
| Inferring a spatial code of cell-cell interactions across a whole animal body E Armingol, A Ghaddar, CJ Joshi, H Baghdassarian, I Shamie, J Chan, ... PLoS computational biology 18 (11), e1010715, 2022 | 40 | 2022 |
| StanDep: Capturing transcriptomic variability improves context-specific metabolic models CJ Joshi, SM Schinn, A Richelle, I Shamie, EJ O’Rourke, NE Lewis PLoS computational biology 16 (5), e1007764, 2020 | 32 | 2020 |
| Multiple freeze-thaw cycles lead to a loss of consistency in poly (A)-enriched RNA sequencing BP Kellman, HM Baghdassarian, T Pramparo, I Shamie, V Gazestani, ... BMC genomics 22, 1-15, 2021 | 28 | 2021 |
| A Chinese hamster transcription start site atlas that enables targeted editing of CHO cells I Shamie, SH Duttke, KJC Karottki, CZ Han, AH Hansen, H Hefzi, K Xiong, ... NAR genomics and bioinformatics 3 (3), lqab061, 2021 | 17 | 2021 |
| Coarse behavioral context decoding A Alasfour, P Gabriel, X Jiang, I Shamie, L Melloni, T Thesen, P Dugan, ... Journal of neural engineering 16 (1), 016021, 2019 | 11 | 2019 |
| K Doyle W, Friedman D, Dugan P, Devinsky O, Eskandar E, Cash SS, Thesen T, Halgren E. 2017. Replay of large-scale spatio-temporal patterns from waking during subsequent NREM … X Jiang, I Shamie Scientific Reports 7, 17380, 0 | 9 | |
| Strategies for network GWAS evaluated using classroom crowd science SH Fong, DE Carlin, K Ozturk, N Arang, B Bao, H Bennett, X Cai, K Chau, ... Cell systems 8 (4), 275-280, 2019 | 6 | 2019 |
| Spatiotemporal dynamics of human high gamma discriminate naturalistic behavioral states A Alasfour, P Gabriel, X Jiang, I Shamie, L Melloni, T Thesen, P Dugan, ... PLoS computational biology 18 (8), e1010401, 2022 | 3 | 2022 |
| Protein structure, a genetic encoding for glycosylation BP Kellman, D Sandoval, OO Zaytseva, K Brock, S Baboo, ... bioRxiv, 2024.05. 15.594261, 2024 | 1 | 2024 |
| Methods to stabilize mammalian cells NE Lewis, P Spahn, S Li, H Hefzi, I Shamie US Patent App. 17/767,844, 2024 | | 2024 |
| Comparative single-cell lineage bias in human and murine hematopoietic stem cells I Shamie, M Bliss-Moreau, JC Lee, R Mathieu, HM Hoffman, B Geng, ... bioRxiv, 2024.11. 19.624262, 2024 | | 2024 |
| A reconstruction of the mammalian secretory pathway identifies mechanisms regulating antibody production H Masson, J Tat, P Di Giusto, A Antonakoudis, I Shamie, ... bioRxiv, 2024.11. 14.623668, 2024 | | 2024 |
| T-Cell Clonality, Functional Changes, and Clinical Response after Dupilumab in Atopic Dermatitis and Asthma Patients M Dilley, L Loop, B Croker, S Aceves, N Lewis, Y Zhu, J Lee, I Shamie, ... Journal of Allergy and Clinical Immunology 151 (2), AB219, 2023 | | 2023 |