| METAXA2: improved identification and taxonomic classification of small and large subunit rRNA in metagenomic data J Bengtsson‐Palme, M Hartmann, KM Eriksson, C Pal, K Thorell, ... Molecular Ecology Resources 15 (6), 1403-1414, 2015 | 509 | 2015 |
| Bicarbonate and functional CFTR channel are required for proper mucin secretion and link cystic fibrosis with its mucus phenotype JK Gustafsson, A Ermund, D Ambort, MEV Johansson, HE Nilsson, ... Journal of Experimental Medicine 209 (7), 1263-1272, 2012 | 402 | 2012 |
| Rapid evolution of distinct Helicobacter pylori subpopulations in the Americas K Thorell, K Yahara, E Berthenet, DJ Lawson, J Mikhail, I Kato, A Mendez, ... PLoS genetics 13 (2), e1006546, 2017 | 101 | 2017 |
| Building pangenome graphs E Garrison, A Guarracino, S Heumos, F Villani, Z Bao, L Tattini, ... Nature Methods, 1-5, 2024 | 100 | 2024 |
| In Vivo Analysis of the Viable Microbiota and Helicobacter pylori Transcriptome in Gastric Infection and Early Stages of Carcinogenesis K Thorell, J Bengtsson-Palme, OHF Liu, RV Palacios Gonzales, ... Infection and immunity 85 (10), 10.1128/iai. 00031-17, 2017 | 87 | 2017 |
| Whole genome sequence and phylogenetic analysis show Helicobacter pylori strains from latin America have followed a unique evolution pathway ZY Muñoz-Ramírez, A Mendez-Tenorio, I Kato, MM Bravo, C Rizzato, ... Frontiers in cellular and infection microbiology 7, 50, 2017 | 86 | 2017 |
| A GWAS on Helicobacter pylori strains points to genetic variants associated with gastric cancer risk E Berthenet, K Yahara, K Thorell, B Pascoe, G Meric, JM Mikhail, ... BMC biology 16, 1-11, 2018 | 80 | 2018 |
| Transcriptome signatures in Helicobacter pylori-infected mucosa identifies acidic mammalian chitinase loss as a corpus atrophy marker I Nookaew, K Thorell, K Worah, S Wang, ML Hibberd, H Sjövall, ... BMC medical genomics 6, 1-14, 2013 | 69 | 2013 |
| Global analysis of more than 50,000 SARS-CoV-2 genomes reveals epistasis between eight viral genes HL Zeng, V Dichio, E Rodríguez Horta, K Thorell, E Aurell Proceedings of the National Academy of Sciences 117 (49), 31519-31526, 2020 | 63 | 2020 |
| Verification of genes differentially expressed in neuroblastoma tumours: a study of potential tumour suppressor genes K Thorell, A Bergman, H Carén, S Nilsson, P Kogner, T Martinsson, F Abel BMC medical genomics 2, 1-13, 2009 | 62 | 2009 |
| Whole-Genome Sequencing Redefines Shewanella Taxonomy K Thorell, JP Meier-Kolthoff, Å Sjöling, AJ Martín-Rodríguez Frontiers in microbiology 10, 1861, 2019 | 60 | 2019 |
| Diarrheal bacterial pathogens and multi-resistant enterobacteria in the Choqueyapu River in La Paz, Bolivia J Guzman-Otazo, L Gonzales-Siles, V Poma, J Bengtsson-Palme, ... PLoS One 14 (1), e0210735, 2019 | 58 | 2019 |
| Strategies to improve usability and preserve accuracy in biological sequence databases J Bengtsson‐Palme, F Boulund, R Edström, A Feizi, A Johnning, ... Proteomics 16 (18), 2454-2460, 2016 | 54 | 2016 |
| Metaxa2 Database Builder: enabling taxonomic identification from metagenomic or metabarcoding data using any genetic marker J Bengtsson-Palme, RT Richardson, M Meola, C Wurzbacher, ... Bioinformatics 34 (23), 4027-4033, 2018 | 51* | 2018 |
| Metaxa2 diversity tools: easing microbial community analysis with Metaxa2 J Bengtsson-Palme, K Thorell, C Wurzbacher, Å Sjöling, RH Nilsson Ecological informatics 33, 45-50, 2016 | 48 | 2016 |
| A 500-year tale of co-evolution, adaptation, and virulence: Helicobacter pylori in the Americas ZY Muñoz-Ramirez, B Pascoe, A Mendez-Tenorio, E Mourkas, ... The ISME journal 15 (1), 78-92, 2021 | 46 | 2021 |
| Repeated Isolation of Extended-Spectrum-β-Lactamase-Positive Escherichia coli Sequence Types 648 and 131 from Community Wastewater Indicates that … E Paulshus, K Thorell, J Guzman-Otazo, E Joffre, P Colque, I Kühn, ... Antimicrobial Agents and Chemotherapy 63 (9), 10.1128/aac. 00823-19, 2019 | 43 | 2019 |
| Genomics of Helicobacter pylori K Thorell, P Lehours, FF Vale Helicobacter 22, e12409, 2017 | 34 | 2017 |
| Alterations of c‐di‐GMP turnover proteins modulate semi‐constitutive rdar biofilm formation in commensal and uropathogenic Escherichia coli A Cimdins, R Simm, F Li, P Lüthje, K Thorell, Å Sjöling, A Brauner, ... MicrobiologyOpen 6 (5), e00508, 2017 | 32 | 2017 |
| Identification of a Latin American-specific BabA adhesin variant through whole genome sequencing of Helicobacter pylori patient isolates from Nicaragua K Thorell, S Hosseini, RVP Palacios Gonzáles, C Chaotham, DY Graham, ... BMC Evolutionary Biology 16 (1), 1-16, 2016 | 28 | 2016 |
Åsa SjölingKarolinska InstitutetEmail verificata su ki.se