| Wisdom of crowds for robust gene network inference (As part of the DREAM5 consortium) D Marbach, JC Costello, R Küffner, NM Vega, RJ Prill, DM Camacho, ... Nature methods, 2012 | 1874 | 2012 |
| A validated regulatory network for Th17 cell specification M Ciofani, A Madar, C Galan, ML Sellars, K Mace, F Pauli, A Agarwal, ... Cell 151 (2), 289-303, 2012 | 1334 | 2012 |
| ICOS-based chimeric antigen receptors program bipolar TH17/TH1 cells S Guedan, X Chen, A Madar, C Carpenito, SE McGettigan, MJ Frigault, ... Blood, The Journal of the American Society of Hematology 124 (7), 1070-1080, 2014 | 454 | 2014 |
| A predictive model for transcriptional control of physiology in a free living cell R Bonneau, MT Facciotti, DJ Reiss, AK Schmid, M Pan, A Kaur, ... Cell 131 (7), 1354-1365, 2007 | 369 | 2007 |
| DREAM4: Combining genetic and dynamic information to identify biological networks and dynamical models A Greenfield, A Madar, H Ostrer, R Bonneau PloS one 5 (10), e13397, 2010 | 303 | 2010 |
| TET2-driven clonal hematopoiesis and response to canakinumab: an exploratory analysis of the CANTOS randomized clinical trial EC Svensson, A Madar, CD Campbell, Y He, M Sultan, ML Healey, H Xu, ... JAMA cardiology 7 (5), 521-528, 2022 | 216 | 2022 |
| Single residue in CD28-costimulated CAR-T cells limits long-term persistence and antitumor durability S Guedan, A Madar, V Casado-Medrano, C Shaw, A Wing, F Liu, ... The Journal of clinical investigation 130 (6), 3087-3097, 2020 | 151 | 2020 |
| DREAM3: network inference using dynamic context likelihood of relatedness and the inferelator A Madar, A Greenfield, E Vanden-Eijnden, R Bonneau PloS one 5 (3), e9803, 2010 | 136 | 2010 |
| Accounting for eXentricities: analysis of the X chromosome in GWAS reveals X-linked genes implicated in autoimmune diseases D Chang, F Gao, A Slavney, L Ma, YY Waldman, AJ Sams, P Billing-Ross, ... PloS one 9 (12), e113684, 2014 | 130 | 2014 |
| Leveraging chromatin accessibility for transcriptional regulatory network inference in T Helper 17 Cells ER Miraldi, M Pokrovskii, A Watters, DM Castro, N De Veaux, JA Hall, ... Genome research 29 (3), 449-463, 2019 | 120 | 2019 |
| Inhibition of androgen receptor and β-catenin activity in prostate cancer E Lee, A Madar, G David, MJ Garabedian, R DasGupta, SK Logan Proceedings of the National Academy of Sciences 110 (39), 15710-15715, 2013 | 117 | 2013 |
| TET2-driven clonal hematopoiesis predicts enhanced response to canakinumab in the CANTOS trial: an exploratory analysis EC Svensson, A Madar, CD Campbell, Y He, M Sultan, ML Healey, ... Circulation 138 (Suppl_1), A15111-A15111, 2018 | 86 | 2018 |
| Release of stem cells from quiescence reveals gliogenic domains in the adult mouse brain AC Delgado, AR Maldonado-Soto, V Silva-Vargas, D Mizrak, T von Känel, ... Science 372 (6547), 1205-1209, 2021 | 73 | 2021 |
| The Inferelator 2.0: a scalable framework for reconstruction of dynamic regulatory network models A Madar, A Greenfield, H Ostrer, E Vanden-Eijnden, R Bonneau 2009 Annual International Conference of the IEEE Engineering in Medicine and …, 2009 | 70 | 2009 |
| Inhibition of β-catenin–TCF1 interaction delays differentiation of mouse embryonic stem cells SS Chatterjee, A Saj, T Gocha, M Murphy, FC Gonsalves, X Zhang, ... Journal of Cell Biology 211 (1), 39-51, 2015 | 39 | 2015 |
| Genotet: An interactive web-based visual exploration framework to support validation of gene regulatory networks B Yu, H Doraiswamy, X Chen, E Miraldi, ML Arrieta-Ortiz, C Hafemeister, ... IEEE transactions on visualization and computer graphics 20 (12), 1903-1912, 2014 | 18 | 2014 |
| Learning global models of transcriptional regulatory networks from data A Madar, R Bonneau Computational Systems Biology, 181-210, 2009 | 16 | 2009 |
| LNA043, a novel cartilage regenerative treatment for osteoarthritis: results from a first-in-human trial in patients with knee osteoarthritis C Scotti, J Gimbel, D Laurent, A Madar, T Peters, Y Zhang, F Polus, ... ARTHRITIS & RHEUMATOLOGY 72, 2020 | 6 | 2020 |
| Coronary artery disease polygenic risk score identifies patients at higher risk for recurrent cardiovascular events in the CANTOS Trial H Xu, C Hon, S Kaiser, P Serrano-Fernandez, N Hartmann, DP Yates, ... Circulation: Genomic and Precision Medicine 14 (6), e003440, 2021 | 1 | 2021 |
| First-in-human trial results of LNA043, a novel cartilage regenerative treatment for osteoarthritis C Scotti, J Gimbel, D Laurent, A Madar, T Peters, Y Zhang, F Polus, ... Osteoarthritis and Cartilage 29, S214, 2021 | 1 | 2021 |