Simon Roux

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138 articoli

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Matthew B SullivanDistinguished Professor, Ohio State University / Founding Director, Center of Microbiome ScienceEmail verificata su osu.edu
Emiley Eloe-FadroshMetagenome Program Head, Joint Genome InstituteEmail verificata su lbl.gov
Nikos C KyrpidesJoint Genome Institute, Lawrence Berkeley National LaboratoryEmail verificata su lbl.gov
Benjamin BolducThe Ohio State UniversityEmail verificata su osu.edu
François EnaultMaître de conférenceEmail verificata su univ-bpclermont.fr
Tanja WoykeDOE Joint Genome InstituteEmail verificata su lbl.gov
Mart KrupovicHead of the Archaeal Virology Unit, Institut PasteurEmail verificata su pasteur.fr
Stephen NayfachProfluent BioEmail verificata su profluent.bio
Frederik SchulzDOE Joint Genome InstituteEmail verificata su lbl.gov
Natalia IvanovaDOE Joint Genome InstituteEmail verificata su lbl.gov
Kelly C. WrightonColorado State UniversityEmail verificata su colostate.edu
TBK ReddyLawrence Berkeley National LaboratoryEmail verificata su lbl.gov
Didier DEBROASUCAEmail verificata su uca.fr
Gareth (Gary) TrublStaff Scientist at Lawrence Livermore National LaboratoryEmail verificata su llnl.gov
Neha J VargheseDOE Joint Genome InstituteEmail verificata su lbl.gov
Natalie SolonenkoOhio State UniversityEmail verificata su osu.edu
Virginia I. RichAssociate Professor of Microbial Ecology, Ohio State UniversityEmail verificata su osu.edu
Bas E. DutilhMicroverse Cluster, Friedrich Schiller University Jena | Bioinformatics, Utrecht UniversityEmail verificata su uni-jena.de
Rebecca A. DalyScience Strategy & Operations Lead, Soil Health, SyngentaEmail verificata su syngenta.com
Joanne B. EmersonAssociate Professor, University of California, DavisEmail verificata su ucdavis.edu

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Simon Roux

DOE Joint Genome Institute

Email verificata su lbl.gov - Home page

viral diversity virus evolution viruses of microbes metagenomics bioinformatics


Titolo Ordina per citazioni Ordina per anno Ordina per titolo	Citata da Citata da	Anno
Microbiota transfer therapy alters gut ecosystem and improves gastrointestinal and autism symptoms: an open-label study DW Kang, JB Adams, AC Gregory, T Borody, L Chittick, A Fasano, ... Microbiome 5, 1-16, 2017	1401	2017
VirSorter: mining viral signal from microbial genomic data S Roux, F Enault, BL Hurwitz, MB Sullivan PeerJ 3, e985, 2015	1112*	2015
CheckV assesses the quality and completeness of metagenome-assembled viral genomes S Nayfach, AP Camargo, F Schulz, E Eloe-Fadrosh, S Roux, NC Kyrpides Nature biotechnology 39 (5), 578-585, 2021	1093	2021
Determinants of community structure in the global plankton interactome G Lima-Mendez, K Faust, N Henry, J Decelle, S Colin, F Carcillo, ... Science 348 (6237), 1262073, 2015	931	2015
VirSorter2: a multi-classifier, expert-guided approach to detect diverse DNA and RNA viruses J Guo, B Bolduc, AA Zayed, A Varsani, G Dominguez-Huerta, TO Delmont, ... Microbiome 9, 1-13, 2021	812	2021
Ecogenomics and potential biogeochemical impacts of globally abundant ocean viruses S Roux, JR Brum, BE Dutilh, S Sunagawa, MB Duhaime, A Loy, ... Nature, 2016	800	2016
Plankton networks driving carbon export in the oligotrophic ocean L Guidi, S Chaffron, L Bittner, D Eveillard, A Larhlimi, S Roux, Y Darzi, ... Nature 532 (7600), 465-470, 2016	796	2016
Taxonomic assignment of uncultivated prokaryotic virus genomes is enabled by gene-sharing networks H Bin Jang, B Bolduc, O Zablocki, JH Kuhn, S Roux, EM Adriaenssens, ... Nature biotechnology 37 (6), 632-639, 2019	757	2019
Patterns and ecological drivers of ocean viral communities JR Brum, JC Ignacio-Espinoza, S Roux, G Doulcier, SG Acinas, A Alberti, ... Science 348 (6237), 1261498, 2015	730	2015
Marine DNA viral macro-and microdiversity from pole to pole AC Gregory, AA Zayed, N Conceição-Neto, B Temperton, B Bolduc, ... Cell 177 (5), 1109-1123. e14, 2019	724	2019
A genomic catalog of Earth’s microbiomes S Nayfach, S Roux, R Seshadri, D Udwary, N Varghese, F Schulz, D Wu, ... Nature biotechnology 39 (4), 499-509, 2021	719	2021
DRAM for distilling microbial metabolism to automate the curation of microbiome function M Shaffer, MA Borton, BB McGivern, AA Zayed, SL La Rosa, LM Solden, ... Nucleic acids research 48 (16), 8883-8900, 2020	680	2020
Minimum information about an uncultivated virus genome (MIUViG) S Roux, EM Adriaenssens, BE Dutilh, EV Koonin, AM Kropinski, ... Nature biotechnology 37 (1), 29-37, 2019	564	2019
Viral dark matter and virus–host interactions resolved from publicly available microbial genomes S Roux, SJ Hallam, T Woyke, MB Sullivan elife 4, e08490, 2015	493	2015
Host-linked soil viral ecology along a permafrost thaw gradient JB Emerson, S Roux, JR Brum, B Bolduc, BJ Woodcroft, HB Jang, ... Nature microbiology 3 (8), 870-880, 2018	484*	2018
The IMG/M data management and analysis system v. 6.0: new tools and advanced capabilities IMA Chen, K Chu, K Palaniappan, A Ratner, J Huang, M Huntemann, ... Nucleic acids research 49 (D1), D751-D763, 2021	429	2021
Phages rarely encode antibiotic resistance genes: a cautionary tale for virome analyses F Enault, A Briet, L Bouteille, S Roux, MB Sullivan, MA Petit The ISME journal 11 (1), 237-247, 2017	393	2017
Gene expression changes and community turnover differentially shape the global ocean metatranscriptome G Salazar, L Paoli, A Alberti, J Huerta-Cepas, HJ Ruscheweyh, M Cuenca, ... Cell 179 (5), 1068-1083. e21, 2019	348	2019
IMG/VR v3: an integrated ecological and evolutionary framework for interrogating genomes of uncultivated viruses S Roux, D Páez-Espino, IMA Chen, K Palaniappan, A Ratner, K Chu, ... Nucleic acids research 49 (D1), D764-D775, 2021	307	2021
Giant virus diversity and host interactions through global metagenomics F Schulz, S Roux, D Paez-Espino, S Jungbluth, DA Walsh, VJ Denef, ... Nature 578 (7795), 432-436, 2020	302	2020

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