| A comprehensive survey of regulatory network inference methods using single cell RNA sequencing data H Nguyen, D Tran, B Tran, B Pehlivan, T Nguyen Briefings in bioinformatics 22 (3), bbaa190, 2021 | 165 | 2021 |
| Fast and precise single-cell data analysis using a hierarchical autoencoder D Tran, H Nguyen, B Tran, C La Vecchia, HN Luu, T Nguyen Nature Communications 12 (1), 1-10, 2021 | 128 | 2021 |
| A comprehensive survey of tools and software for active subnetwork identification H Nguyen, S Shrestha, D Tran, A Shafi, S Draghici, T Nguyen Frontiers in genetics 10, 155, 2019 | 60 | 2019 |
| CPA: a web-based platform for consensus pathway analysis and interactive visualization H Nguyen, D Tran, JM Galazka, SV Costes, A Beheshti, J Petereit, ... Nucleic Acids Research 49 (W1), W114-W124, 2021 | 31 | 2021 |
| Gene selection for optimal prediction of cell position in tissues from single-cell transcriptomics data J Tanevski, T Nguyen, B Truong, N Karaiskos, ME Ahsen, X Zhang, C Shu, ... Life science alliance 3 (11), 2020 | 24* | 2020 |
| A robust and accurate single-cell data trajectory inference method using ensemble pseudotime Y Zhang, D Tran, T Nguyen, SM Dascalu, FC Harris Jr BMC bioinformatics 24 (1), 55, 2023 | 22 | 2023 |
| scCAN: single-cell clustering using autoencoder and network fusion B Tran, D Tran, H Nguyen, S Ro, T Nguyen Scientific reports 12 (1), 10267, 2022 | 19 | 2022 |
| A Novel Method for Cancer Subtyping and Risk Prediction Using Consensus Factor Analysis D Tran, H Nguyen, U Le, G Bebis, HN Luu, T Nguyen Frontiers in Oncology 10, 1052, 2020 | 19 | 2020 |
| A Crowdsourcing Approach to Develop Machine Learning Models to Quantify Radiographic Joint Damage in Rheumatoid Arthritis D Sun, TM Nguyen, RJ Allaway, J Wang, V Chung, VY Thomas, M Mason, ... JAMA Network Open 5 (8), e2227423-e2227423, 2022 | 17 | 2022 |
| Cell‐to‐cell and type‐to‐type heterogeneity of signaling networks: insights from the crowd A Gabor, M Tognetti, A Driessen, J Tanevski, B Guo, W Cao, H Shen, T Yu, ... Molecular systems biology 17 (10), e10402, 2021 | 17 | 2021 |
| Fourteen years of cellular deconvolution: methodology, applications, technical evaluation and outstanding challenges H Nguyen, H Nguyen, D Tran, S Draghici, T Nguyen Nucleic Acids Research 52 (9), 4761-4783, 2024 | 15 | 2024 |
| A novel method for single-cell data imputation using subspace regression D Tran, B Tran, H Nguyen, T Nguyen Scientific Reports 12 (1), 2697, 2022 | 15 | 2022 |
| Enhanced anticancer efficacy and tumor targeting through folate-PEG modified nanoliposome loaded with 5-fluorouracil VM Le, NTD Tran, H Trieu Ly, TS Vo, H Dung Nguyen, ... Advances in Natural Sciences: Nanoscience and Nanotechnology 8 (1), 015008, 2017 | 14 | 2017 |
| SMRT: Randomized data transformation for cancer subtyping and big data analysis H Nguyen, D Tran, B Tran, M Roy, A Cassell, S Dascalu, S Draghici, ... Frontiers in oncology 11, 725133, 2021 | 10 | 2021 |
| RIA: A novel regression-based imputation approach for single-cell RNA sequencing B Tran, D Tran, H Nguyen, NS Vo, T Nguyen 2019 11th International Conference on Knowledge and Systems Engineering (KSE …, 2019 | 9 | 2019 |
| R Tutorial: Detection of Differentially Interacting Chromatin Regions From Multiple Hi‐C Datasets JC Stansfield, D Tran, T Nguyen, MG Dozmorov Current Protocols in Bioinformatics 66 (1), e76, 2019 | 9 | 2019 |
| Mouse genomic associations with in vitro sensitivity to simulated space radiation E Cekanaviciute, D Tran, H Nguyen, AL Macha, E Pariset, S Langley, ... Life Sciences in Space Research 36, 47-58, 2023 | 8 | 2023 |
| Plasma Proteomic Signature Predicts Myeloid Neoplasm Risk D Tran, JS Beeler, J Liu, B Wiley, ICC Chan, Z Xin, MH Kramer, ... Clinical Cancer Research, OF1-OF9, 2024 | 5 | 2024 |
| Single-Cell RNA Sequencing Data Imputation Using Deep Neural Network D Tran, B Tran, H Nguyen, FC Harris Jr, NS Vo, T Nguyen ITNG 2021 18th International Conference on Information Technology-New …, 2021 | 4 | 2021 |
| Disease subtyping using community detection from consensus networks H Nguyen, B Tran, D Tran, QH Nguyen, DH Le, T Nguyen 2020 12th International Conference on Knowledge and Systems Engineering (KSE …, 2020 | 4 | 2020 |
Tin NguyenAuburn UniversityEmail verificata su auburn.edu
