| Improving protein succinylation sites prediction using embeddings from protein language model S Pokharel, P Pratyush, M Heinzinger, RH Newman, DB Kc Scientific Reports 12 (1), 16933, 2022 | 44 | 2022 |
| LMPhosSite: A Deep Learning-Based Approach for General Protein Phosphorylation Site Prediction Using Embeddings from the Local Window Sequence and Pretrained Protein Language Model SC Pakhrin, S Pokharel, P Pratyush, M Chaudhari, HD Ismail, DB Kc Journal of proteome research 22 (8), 2548-2557, 2023 | 18 | 2023 |
| pLMSNOSite: an ensemble-based approach for predicting protein S-nitrosylation sites by integrating supervised word embedding and embedding from pre-trained protein language model P Pratyush, S Pokharel, H Saigo, DB KC BMC Bioinformatics 24 (1), 1-20, 2023 | 16 | 2023 |
| Integrating Embeddings from Multiple Protein Language Models to Improve Protein O-GlcNAc Site Prediction S Pokharel, P Pratyush, HD Ismail, J Ma, DB KC International Journal of Molecular Sciences 24 (21), 16000, 2023 | 12 | 2023 |
| CaLMPhosKAN: Prediction of General Phosphorylation Sites in Proteins via Fusion of Codon Aware Embeddings with Amino Acid Aware Embeddings and Wavelet-based Kolmogorov Arnold … P Pratyush, C Carrier, S Pokharel, HD Ismail, M Chaudhari, DB KC bioRxiv, 2024.07. 30.605530, 2024 | 6 | 2024 |
| LMCrot: An enhanced protein crotonylation site predictor by leveraging an interpretable window-level embedding from a transformer-based protein language model P Pratyush, S Bahmani, S Pokharel, HD Ismail, DB Kc Bioinformatics 40 (5), 2024 | 5 | 2024 |
| Taxi‐demand forecasting using dynamic spatiotemporal analysis A Gangrade, P Pratyush, G Hajela ETRI Journal 44 (4), 624-640, 2021 | 4 | 2021 |
| Automation Of Transiting Exoplanet Detection, Identification and Habitability Assessment Using Machine Learning Approaches P Pratyush, A Gangrade National Institute of Technology, Bhopal, 2021 | 2 | 2021 |
| Advances in Prediction of Posttranslational Modification Sites Known to Localize in Protein Supersecondary Structures P Pratyush, DB Kc Protein Supersecondary Structures 2870, 117-151, 2025 | | 2025 |
| LMPTMSite: A Platform for PTM Site Prediction in Proteins Leveraging Transformer-Based Protein Language Models P Pratyush, S Pokharel, HD Ismail, S Bahmani, DB Kc Methods in Molecular Biology, 261-297, 2024 | | 2024 |
| pLM-DBPs: Enhanced DNA-Binding Protein Prediction in Plants Using Embeddings From Protein Language Models S Pokharel, K Barasa, P Pratyush, DB KC bioRxiv, 2024.10. 04.616755, 2024 | | 2024 |
| LMSuccSite: Improving Protein Succinylation Sites Prediction Using Embeddings from Protein Language Model S Pokharel, P Pratyush, M Heinzinger, R Newman, KC Dukka | | 2022 |
| Nirikshak: A Clustering Based Autonomous API Testing Framework Y Mahalwal, P Pratyush, Y Poonia arXiv preprint arXiv:2112.08315, 2021 | | 2021 |
| LMArabiPhos: Prediction of phosphorylation sites in Arabidopsis Thaliana using embeddings from a pre-trained protein language model M Chaudhari, P Pratyush, KC Dukka 2025 Joint Mathematics Meetings (JMM 2025), 0 | | |
| Supplementary Sections P Pratyush, S Bahmani, S Pokharel, HD Ismail, B Dukka | | |
Suresh PokharelRochester Institute of TechnologyEmail verificata su rit.edu
