| The role of nucleobase interactions in RNA structure and dynamics S Bottaro, F Di Palma, G Bussi Nucleic acids research 42 (21), 13306-13314, 2014 | 155 | 2014 |
| Ligand-induced stabilization of the aptamer terminal helix in the add adenine riboswitch F Di Palma, F Colizzi, G Bussi RNA 19 (11), 1517-1524, 2013 | 56 | 2013 |
| Kissing loop interaction in adenine riboswitch: insights from umbrella sampling simulations F Di Palma, S Bottaro, G Bussi BMC bioinformatics 16 (9), 1-9, 2015 | 34 | 2015 |
| Insights into the homo-oligomerization properties of N-terminal coiled-coil domain of Ebola virus VP35 protein VK Ramaswamy, F Di Palma, AV Vargiu, A Corona, D Piano, ... Virus research 247, 61-70, 2018 | 19 | 2018 |
| Relevance of Ebola virus VP35 homo-dimerization on the type I interferon cascade inhibition F Di Palma, GL Daino, VK Ramaswamy, A Corona, A Frau, E Fanunza, ... Antiviral Chemistry and Chemotherapy 27, 2040206619889220, 2019 | 18 | 2019 |
| Structural-dynamical investigation of the ZnuA histidine-rich loop: involvement in zinc management and transport M Falconi, F Oteri, F Di Palma, S Pandey, A Battistoni, A Desideri Journal of computer-aided molecular design 25 (2), 181-194, 2011 | 18 | 2011 |
| Ligandability and druggability assessment via machine learning F Di Palma, C Abate, S Decherchi, A Cavalli Wiley Interdisciplinary Reviews: Computational Molecular Science 13 (5), e1676, 2023 | 12 | 2023 |
| Dynamics behind affinity maturation of an anti‐HCMV antibody family influencing antigen binding F Di Palma, A Tramontano FEBS letters 591 (18), 2936-2950, 2017 | 9 | 2017 |
| Using reweighted pulling simulations to characterize conformational changes in riboswitches F Di Palma, F Colizzi, G Bussi Methods in enzymology 553, 139-162, 2015 | 8 | 2015 |
| Probing interplays between human XBP1u translational arrest peptide and 80S ribosome F Di Palma, S Decherchi, F Pardo-Avila, S Succi, M Levitt, G von Heijne, ... Journal of chemical theory and computation 18 (3), 1905-1914, 2021 | 6 | 2021 |
| Towards de novo RNA 3D structure prediction S Bottaro, F Di Palma, G Bussi arXiv preprint arXiv:1502.05667, 2015 | 5 | 2015 |
| New Insights into the LANCL2-ABA Binding Mode towards the Evaluation of New LANCL Agonists N Scarano, F Di Palma, N Origlia, F Musumeci, S Schenone, S Spinelli, ... Pharmaceutics 15 (12), 2754, 2023 | 4 | 2023 |
| Molecular Dynamics and Machine Learning Give Insights on the Flexibility–Activity Relationships in Tyrosine Kinome S Majumdar, F Di Palma, F Spyrakis, S Decherchi, A Cavalli Journal of Chemical Information and Modeling 63 (15), 4814-4826, 2023 | 3 | 2023 |
| Role of Magnesium Ions and Ligand Stacking in the Adenine Riboswitch Folding F Di Palma, F Colizzi, G Bussi Biophysical Journal 106 (2), 285a, 2014 | 2 | 2014 |
| Three-stage multiscale modelling of the NMDA neuroreceptor F Di Palma, S Succi, F Sterpone, M Lauricella, F Pérot, S Melchionna Molecular Physics 119 (19-20), e1928312, 2021 | 1 | 2021 |
| Computationally-designed aptamers targeting RAD51-BRCA2 interaction inhibit RAD51 nuclear recruitment G Miliordini, E Zacco, A Armaos, F Di Palma, M Masi, M Giloid, J Rupert, ... bioRxiv, 2025.01. 20.633558, 2025 | | 2025 |
| Insights into Ebola VP35 oligomerization from molecular simulations F Di Palma, VK Ramaswamy, G Daino, A Frau, A Corona, L Zinzula, ... 255th ACS National Meeting & Exposition 255, 2018 | | 2018 |
| Conformational changes in the adenine riboswitch F Di Palma SISSA, 2014 | | 2014 |
| Kissing loop interaction in adenine riboswitch: insights from umbrella sampling simulations S Bottaro, F Di Palma, G Bussi | | |