| Optimal-transport analysis of single-cell gene expression identifies developmental trajectories in reprogramming G Schiebinger*, J Shu*, M Tabaka*, B Cleary*, V Subramanian, ... Cell 176 (4), 928-943. e22, 2019 | 912 | 2019 |
| Systematic mapping of functional enhancer–promoter connections with CRISPR interference CP Fulco, M Munschauer, R Anyoha, G Munson, SR Grossman, EM Perez, ... Science 354 (6313), 769-773, 2016 | 659 | 2016 |
| Multimodal pooled Perturb-CITE-seq screens in patient models define mechanisms of cancer immune evasion CJ Frangieh, JC Melms, PI Thakore, KR Geiger-Schuller, P Ho, ... Nature Genetics, 1-10, 2021 | 197 | 2021 |
| Detection of low-abundance bacterial strains in metagenomic datasets by eigengenome partitioning B Cleary, IL Brito, K Huang, D Gevers, T Shea, S Young, EJ Alm Nature biotechnology 33 (10), 1053, 2015 | 171 | 2015 |
| High resolution time series reveals cohesive but short-lived communities in coastal plankton AM Martin-Platero*, B Cleary*, K Kauffman, SP Preheim, DJ McGillicuddy, ... Nature communications 9 (1), 1-11, 2018 | 154 | 2018 |
| Efficient Generation of Transcriptomic Profiles by Random Composite Measurements B Cleary, L Cong, A Cheung, ES Lander, A Regev Cell 171 (6), 1424-1436. e18, 2017 | 134* | 2017 |
| LAMP-Seq enables sensitive, multiplexed COVID-19 diagnostics using molecular barcoding KU Ludwig, RM Schmithausen, D Li, ML Jacobs, R Hollstein, ... Nature Biotechnology 39 (12), 1556-1562, 2021 | 110* | 2021 |
| Using viral load and epidemic dynamics to optimize pooled testing in resource-constrained settings B Cleary*, JA Hay*, B Blumenstiel, M Harden, M Cipicchio, J Bezney, ... Science Translational Medicine, 2021 | 78* | 2021 |
| Compressed sensing for highly efficient imaging transcriptomics B Cleary, B Simonton, J Bezney, E Murray, S Alam, A Sinha, E Habibi, ... Nature Biotechnology 39 (8), 936-942, 2021 | 55* | 2021 |
| Scalable genetic screening for regulatory circuits using compressed Perturb-seq D Yao, L Binan, J Bezney, B Simonton, J Freedman, CJ Frangieh, K Dey, ... Nature Biotechnology, 1-14, 2023 | 51* | 2023 |
| Convergence of coronary artery disease genes onto endothelial cell programs GR Schnitzler, H Kang, S Fang, RS Angom, VS Lee-Kim, XR Ma, R Zhou, ... Nature, 1-9, 2024 | 38* | 2024 |
| Inferring gene regulation from stochastic transcriptional variation across single cells at steady state A Gupta, JD Martin-Rufino, TR Jones, V Subramanian, X Qiu, EI Grody, ... Proceedings of the National Academy of Sciences 119 (34), e2207392119, 2022 | 25 | 2022 |
| Deep Unrolled Recovery in Sparse Biological Imaging: Achieving fast, accurate results YB Sahel, JP Bryan, B Cleary, SL Farhi, YC Eldar IEEE Signal Processing Magazine 39 (2), 45-57, 2022 | 22 | 2022 |
| The necessity and power of random, under-sampled experiments in biology B Cleary, A Regev arXiv preprint arXiv:2012.12961, 2020 | 18 | 2020 |
| Group testing via hypergraph factorization applied to COVID-19 D Hong, R Dey, X Lin, B Cleary, E Dobriban Nature Communications 13 (1), 1-13, 2022 | 15* | 2022 |
| Simultaneous CRISPR screening and spatial transcriptomics reveals intracellular, intercellular, and functional transcriptional circuits. L Binan, S Danquah, V Valakh, B Simonton, J Bezney, R Nehme, ... bioRxiv, 2023.11. 30.569494, 2023 | 14 | 2023 |
| Sparse Recovery Of Imaging Transcriptomics Data JP Bryan, B Cleary, SL Farhi, YC Eldar 2021 IEEE 18th International Symposium on Biomedical Imaging (ISBI), 802-806, 2021 | 8 | 2021 |
| Extrapolating missing antibody-virus measurements across serological studies T Einav, B Cleary Cell Systems 13 (7), 561-573. e5, 2022 | 7 | 2022 |
| Scalable, compressed phenotypic screening using pooled perturbations N Liu, WE Kattan, BE Mead, C Kummerlowe, T Cheng, S Ingabire, ... Nature Biotechnology, 1-13, 2024 | 4* | 2024 |
| Single-cell and spatiotemporal profile of ovulation in the mouse ovary R Huang, CE Kratka, J Pea, C McCann, J Nelson, JP Bryan, LT Zhou, ... bioRxiv, 2024.05. 20.594719, 2024 | 3 | 2024 |
Geoffrey SchiebingerUniversity of British ColumbiaEmail verificata su math.ubc.ca