Ben Langmead

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Steven SalzbergBloomberg Distinguished Professor, Johns Hopkins UniversityEmail verificata su jhu.edu
Jeff LeekChief Data Officer, VP, and J Orin Edson Foundation Professor, Fred Hutchinson Cancer CenterEmail verificata su fredhutch.org
Kasper D. HansenDepartment of Biostatistics, Johns Hopkins UniversityEmail verificata su jhsph.edu
Mihai PopProfessor of Computer Science, University of Maryland, College ParkEmail verificata su umd.edu
Cole TrapnellAssociate Professor, Dept. of Genome Sciences, University of WashingtonEmail verificata su uw.edu
Andrew E. JaffeVP, Head of Data Sciences, Neumora TherapeuticsEmail verificata su neumoratx.com
Christopher WilksPhD Student in Computer Science, Johns Hopkins UniversityEmail verificata su jhu.edu
Rafael A IrizarryProfessor, Biostatistics and Computational Biology, Dana-Farber and HarvardEmail verificata su ds.dfci.harvard.edu
Daehwan KimOmphalos Lifesciences IncEmail verificata su omphaloslifesci.com
Michael C. SchatzBloomberg Distinguished Professor, Johns Hopkins UniversityEmail verificata su cs.jhu.edu
Leonardo Collado-TorresInvestigator at LIBD + Asst. Prof., Department of Biostatistics, JHBSPHEmail verificata su libd.org
Travis GagieAssociate Professor at Dalhousie UniversityEmail verificata su dal.ca
Andrew P. FeinbergDirector, Center for Epigenetics; Bloomberg Distinguished Professor, Johns Hopkins UniversityEmail verificata su jhu.edu
Christina BoucherUniversity of FloridaEmail verificata su ufl.edu
Derrick WoodBlackjack BiotechnologiesEmail verificata su cs.jhu.edu
Jennifer Lu, Ph. D.Staff Scientist, Johns Hopkins UniversityEmail verificata su jhmi.edu
Hector Corrada BravoAssociate Professor of Computer Science, University of MarylandEmail verificata su umiacs.umd.edu
Sarven SabunciyanJohns Hopkins UniversityEmail verificata su jhmi.edu
Nae-Chyun ChenExai BioEmail verificata su exai.bio
Geo PerteaData/Software Engineer, Lieber Institute for Brain DevelopmentEmail verificata su jhu.edu

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Ben Langmead

Associate Professor of Computer Science, Johns Hopkins University

Email verificata su cs.jhu.edu - Home page

Sequence Alignment Computational Genomics Computer Science


Titolo Ordina per citazioni Ordina per anno Ordina per titolo	Citata da Citata da	Anno
Fast gapped-read alignment with Bowtie 2 B Langmead, SL Salzberg Nature methods 9 (4), 357-359, 2012	51877	2012
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome B Langmead, C Trapnell, M Pop, SL Salzberg Genome biology 10, 1-10, 2009	24363	2009
HISAT: a fast spliced aligner with low memory requirements D Kim, B Langmead, SL Salzberg Nature methods 12 (4), 357-360, 2015	19312	2015
Improved metagenomic analysis with Kraken 2 DE Wood, J Lu, B Langmead Genome biology 20, 1-13, 2019	4753	2019
Tackling the widespread and critical impact of batch effects in high-throughput data JT Leek, RB Scharpf, HC Bravo, D Simcha, B Langmead, WE Johnson, ... Nature Reviews Genetics 11 (10), 733-739, 2010	2248	2010
Aligning short sequencing reads with Bowtie B Langmead Current protocols in bioinformatics 32 (1), 11.7. 1-11.7. 14, 2010	1472	2010
Increased methylation variation in epigenetic domains across cancer types KD Hansen, W Timp, HC Bravo, S Sabunciyan, B Langmead, ... Nature genetics 43 (8), 768-775, 2011	1260	2011
BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions KD Hansen, B Langmead, RA Irizarry Genome biology 13, 1-10, 2012	816	2012
Ballgown bridges the gap between transcriptome assembly and expression analysis AC Frazee, G Pertea, AE Jaffe, B Langmead, SL Salzberg, JT Leek Nature biotechnology 33 (3), 243-246, 2015	815	2015
Scaling read aligners to hundreds of threads on general-purpose processors B Langmead, C Wilks, V Antonescu, R Charles Bioinformatics 35 (3), 421-432, 2019	716	2019
Searching for SNPs with cloud computing B Langmead, MC Schatz, J Lin, M Pop, SL Salzberg Genome biology 10, 1-10, 2009	666	2009
Cloud-scale RNA-sequencing differential expression analysis with Myrna B Langmead, KD Hansen, JT Leek Genome biology 11, 1-11, 2010	437	2010
Reproducible RNA-seq analysis using recount2 L Collado-Torres, A Nellore, K Kammers, SE Ellis, MA Taub, KD Hansen, ... Nature biotechnology 35 (4), 319-321, 2017	427	2017
Cloud computing and the DNA data race MC Schatz, B Langmead, SL Salzberg Nature biotechnology 28 (7), 691-693, 2010	379	2010
Computational pan-genomics: status, promises and challenges Briefings in bioinformatics 19 (1), 118-135, 2018	369	2018
Reversible switching between epigenetic states in honeybee behavioral subcastes BR Herb, F Wolschin, KD Hansen, MJ Aryee, B Langmead, R Irizarry, ... Nature neuroscience 15 (10), 1371-1373, 2012	367	2012
Cloud computing for genomic data analysis and collaboration B Langmead, A Nellore Nature Reviews Genetics 19 (4), 208-219, 2018	337	2018
Metagenome analysis using the Kraken software suite J Lu, N Rincon, DE Wood, FP Breitwieser, C Pockrandt, B Langmead, ... Nature protocols 17 (12), 2815-2839, 2022	330	2022
Polyester: simulating RNA-seq datasets with differential transcript expression AC Frazee, AE Jaffe, B Langmead, JT Leek Bioinformatics 31 (17), 2778-2784, 2015	323	2015
Lighter: fast and memory-efficient sequencing error correction without counting L Song, L Florea, B Langmead Genome biology 15, 1-13, 2014	298	2014

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