| Interpretable tree-based ensemble model for predicting beach water quality L Li, J Qiao, G Yu, L Wang, HY Li, C Liao, Z Zhu Water Research 211, 118078, 2022 | 138 | 2022 |
| An integrative circuit–host modelling framework for predicting synthetic gene network behaviours C Liao, AE Blanchard, T Lu Nature microbiology, 2017 | 100 | 2017 |
| Integrated, systems metabolic picture of acetone-butanol-ethanol fermentation by Clostridium acetobutylicum C Liao, SO Seo, V Celik, H Liu, W Kong, Y Wang, H Blaschek, YS Jin, ... Proceedings of the National Academy of Sciences 112 (27), 8505-8510, 2015 | 80 | 2015 |
| Ecological dynamics of the gut microbiome in response to dietary fiber H Liu, C Liao, L Wu, J Tang, J Chen, C Lei, L Zheng, C Zhang, YY Liu, ... The ISME journal 16 (8), 2040-2055, 2022 | 78 | 2022 |
| Improving the robustness of beach water quality modeling using an ensemble machine learning approach L Wang, Z Zhu, L Sassoubre, G Yu, C Liao, Q Hu, Y Wang Science of The Total Environment 765, 142760, 2021 | 62 | 2021 |
| Engineering robust and tunable spatial structures with synthetic gene circuits W Kong, AE Blanchard, C Liao, T Lu Nucleic acids research 45 (2), 1005-1014, 2017 | 56 | 2017 |
| Modeling microbial cross-feeding at intermediate scale portrays community dynamics and species coexistence C Liao, T Wang, S Maslov, JB Xavier PLoS computational biology 16 (8), e1008135, 2020 | 51 | 2020 |
| Application of metabolic division of labor in simultaneous removal of nitrogen and thiocyanate from wastewater J Pan, J Ma, H Wu, B Chen, M He, C Liao, C Wei Water research 150, 216-224, 2019 | 43 | 2019 |
| Teasing out missing reactions in genome-scale metabolic networks through hypergraph learning C Chen, C Liao, YY Liu Nature Communications 14 (1), 2375, 2023 | 41 | 2023 |
| An ecological understanding of quorum sensing-controlled bacteriocin synthesis AE Blanchard, C Liao, T Lu Cellular and Molecular Bioengineering 9, 443-454, 2016 | 37 | 2016 |
| High-resolution analyses of associations between medications, microbiome, and mortality in cancer patients CL Nguyen, KA Markey, O Miltiadous, A Dai, N Waters, K Sadeghi, T Fei, ... Cell 186 (12), 2705-2718. e17, 2023 | 32 | 2023 |
| Programming the group behaviors of bacterial communities with synthetic cellular communication W Kong, V Celik, C Liao, Q Hua, T Lu Bioresources and Bioprocessing 1, 1-11, 2014 | 31 | 2014 |
| Evolution and regulation of microbial secondary metabolism G Santamaria, C Liao, C Lindberg, Y Chen, Z Wang, K Rhee, FR Pinto, ... Elife 11, e76119, 2022 | 28 | 2022 |
| Oral bacteria relative abundance in faeces increases due to gut microbiota depletion and is linked with patient outcomes C Liao, T Rolling, A Djukovic, T Fei, V Mishra, H Liu, C Lindberg, L Dai, ... Nature microbiology 9 (6), 1555-1565, 2024 | 24 | 2024 |
| Circuit-host coupling induces multifaceted behavioral modulations of a gene switch AE Blanchard, C Liao, T Lu Biophysical journal 114 (3), 737-746, 2018 | 24 | 2018 |
| Compilation of longitudinal microbiota data and hospitalome from hematopoietic cell transplantation patients C Liao, BP Taylor, C Ceccarani, E Fontana, LA Amoretti, RJ Wright, ... Scientific data 8 (1), 71, 2021 | 22 | 2021 |
| System-level modeling of acetone–butanol–ethanol fermentation C Liao, SO Seo, T Lu FEMS microbiology letters 363 (9), fnw074, 2016 | 19 | 2016 |
| Systems-level analysis of NalD mutation, a recurrent driver of rapid drug resistance in acute Pseudomonas aeruginosa infection J Yan, H Estanbouli, C Liao, W Kim, JM Monk, R Rahman, M Kamboj, ... PLoS computational biology 15 (12), e1007562, 2019 | 17 | 2019 |
| A compilation of fecal microbiome shotgun metagenomics from hematopoietic cell transplantation patients J Yan, C Liao, BP Taylor, E Fontana, LA Amoretti, RJ Wright, ER Littmann, ... Scientific data 9 (1), 219, 2022 | 14 | 2022 |
| A minimal transcriptional controlling network of regulatory T cell development C Liao, T Lu The Journal of Physical Chemistry B 117 (42), 12995-13004, 2013 | 13 | 2013 |
Joao XavierFaculty Member, Computational and Systems Biology, Memorial Sloan Kettering Cancer CenterEmail verificata su mskcc.org