James Taylor

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Anton NekrutenkoPenn State UniversityEmail verificata su nekrut.org
Enis AfganResearch Scientist, Johns Hopkins UniversityEmail verificata su jhu.edu
Jeremy GoecksAssistant Center Director, Research Informatics at the Moffitt Cancer CenterEmail verificata su moffitt.org
Daniel BlankenbergCenter for Computational Life Sciences, Lerner Research Institute, Cleveland Clinic / Galaxy ProjectEmail verificata su ccf.org
Ross C. HardisonProfessor Emeritus of Biochemistry and Molecular Biology, The Pennsylvania State UniversityEmail verificata su psu.edu
Webb MillerPenn State University, UC Santa Barbara, ArizonaEmail verificata su bx.psu.edu
Björn GrüningUniversity of FreiburgEmail verificata su informatik.uni-freiburg.de
Dave BouvierComputational Scientist, Pennsylvania State UniversityEmail verificata su bx.psu.edu
Francesca ChiaromonteProfessor of Statistics, Pennsylvania State University, Sant'Anna School of Advanced StudiesEmail verificata su psu.edu
Yong ChengSt.Jude Children's Research HospitalEmail verificata su stjude.org
Gherman UritskiyAmazon ResearchEmail verificata su jhu.edu
Laura ElnitskiNHGRI, NIHEmail verificata su mail.nih.gov
Nicola SoranzoEarlham InstituteEmail verificata su earlham.ac.uk
Marius van den BeekSci-ScaleEmail verificata su sci-scale.net
Jocelyne DiRuggieroJohns Hopkins UniversityEmail verificata su jhu.edu
Belinda Giardinecomputer programmer, Penn State UniversityEmail verificata su bx.psu.edu
Vahid JaliliComputational Scientist II, Broad Institute of MIT and HarvardEmail verificata su broad.mit.edu
Aysam Guerlerwww.guerler.orgEmail verificata su guerler.org
Martin ČechPenn StateEmail verificata su bx.psu.edu
Yu ZhangAssociate Professor of Statistics, The Pennsylvania State UniversityEmail verificata su psu.edu

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James Taylor

Professor of Biology and Computer Science, Johns Hopkins University

Email verificata su jhu.edu - Home page

Bioinformatics Computational Biology Genomics Machine Learning Chromatin Structure


Titolo Ordina per citazioni Ordina per anno Ordina per titolo	Citata da Citata da	Anno
An integrated encyclopedia of DNA elements in the human genome ENCODE Project Consortium Nature 489 (7414), 57-74, 2012	17457	2012
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update E Afgan, D Baker, B Batut, M van den Beek, D Bouvier, M Čech, J Chilton, ... Nucleic acids research 46 (W1), W537-W544, 2018	6174	2018
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project E Birney, JA Stamatoyannopoulos, A Dutta, R Guigó, TR Gingeras, ... Nature 447 (7146), 799-816, 2007	6114	2007
Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences J Goecks, A Nekrutenko, J Taylor Genome Biol 11 (8), R86, 2010	4286	2010
Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution LDW Hillier, W Miller, E Birney, W Warren, RC Hardison, CP Ponting, ... Nature 432 (7018), 695-716, 2004	2966	2004
Galaxy: a platform for interactive large-scale genome analysis B Giardine, C Riemer, RC Hardison, R Burhans, L Elnitski, P Shah, ... Genome research 15 (10), 1451-1455, 2005	2621	2005
Genome sequence of the Brown Norway rat yields insights into mammalian evolution RA Gibbs, GM Weinstock, ML Metzker, DM Muzny, EJ Sodergren, ... Nature 428 (6982), 493-521, 2004	2591	2004
Initial sequence of the chimpanzee genome and comparison with the human genome TC Sequencing, Analysis Consortium Nature 437 (7055), 69-87, 2005	2336	2005
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update E Afgan, D Baker, M Van den Beek, D Blankenberg, D Bouvier, M Čech, ... Nucleic acids research 44 (W1), W3-W10, 2016	2176	2016
A comparative encyclopedia of DNA elements in the mouse genome F Yue, Y Cheng, A Breschi, J Vierstra, W Wu, T Ryba, R Sandstrom, Z Ma, ... Nature 515 (7527), 355-364, 2014	2026	2014
Galaxy: a web‐based genome analysis tool for experimentalists D Blankenberg, GV Kuster, N Coraor, G Ananda, R Lazarus, M Mangan, ... Current protocols in molecular biology 89 (1), 19.10. 1-19.10. 21, 2010	1810	2010
MetaWRAP—a flexible pipeline for genome-resolved metagenomic data analysis GV Uritskiy, J DiRuggiero, J Taylor Microbiome 6 (1), 158, 2018	1647	2018
Architectural protein subclasses shape 3D organization of genomes during lineage commitment JE Phillips-Cremins, MEG Sauria, A Sanyal, TI Gerasimova, BR Lajoie, ... Cell 153 (6), 1281-1295, 2013	1322	2013
Bioconda: a sustainable and comprehensive software distribution for the life sciences R Dale, B Grüning, A Sjödin, J Rowe, BA Chapman, CH Tomkins-Tinch, ... bioRxiv, 207092, 2017	1236*	2017
Topologically associating domains are stable units of replication-timing regulation BD Pope, T Ryba, V Dileep, F Yue, W Wu, O Denas, DL Vera, Y Wang, ... Nature 515 (7527), 402-405, 2014	987	2014
Ten Simple Rules for Reproducible Computational Research GK Sandve, A Nekrutenko, J Taylor, E Hovig PLOS Computational Biology 9 (10), e1003285, 2013	872	2013
Manipulation of FASTQ data with Galaxy D Blankenberg, A Gordon, G Von Kuster, N Coraor, J Taylor, ... Bioinformatics 26 (14), 1783-1785, 2010	828	2010
Genome analysis of the platypus reveals unique signatures of evolution WC Warren, LDW Hillier, JAM Graves, E Birney, CP Ponting, F Grützner, ... Nature 453 (7192), 175-183, 2008	786	2008
An encyclopedia of mouse DNA elements (Mouse ENCODE) JA Stamatoyannopoulos, M Snyder, R Hardison, B Ren, T Gingeras, ... Genome biology 13 (8), 418, 2012	379	2012
Next-generation sequencing data interpretation: enhancing reproducibility and accessibility A Nekrutenko, J Taylor Nature Reviews Genetics 13 (9), 667-672, 2012	374	2012

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