| The future of biotic indices in the ecogenomic era: Integrating (e) DNA metabarcoding in biological assessment of aquatic ecosystems J Pawlowski, M Kelly-Quinn, F Altermatt, L Apothéloz-Perret-Gentil, P Beja, ... Science of The Total Environment 637, 1295-1310, 2018 | 527 | 2018 |
| Assessing ecological status with diatoms DNA metabarcoding: Scaling-up on a WFD monitoring network (Mayotte island, France) V Vasselon, F Rimet, K Tapolczai, A Bouchez Ecological Indicators 82, 1-12, 2017 | 211 | 2017 |
| Diat. barcode, an open-access curated barcode library for diatoms F Rimet, E Gusev, M Kahlert, MG Kelly, M Kulikovskiy, Y Maltsev, ... Scientific Reports 9 (1), 15116, 2019 | 158 | 2019 |
| Freshwater biomonitoring in the Information Age F Keck, V Vasselon, K Tapolczai, F Rimet, A Bouchez Frontiers in Ecology and the Environment 15 (5), 266-274, 2017 | 156 | 2017 |
| Avoiding quantification bias in metabarcoding: Application of a cell biovolume correction factor in diatom molecular biomonitoring V Vasselon, A Bouchez, F Rimet, S Jacquet, R Trobajo, M Corniquel, ... Methods in Ecology and Evolution 9 (4), 1060-1069, 2018 | 143 | 2018 |
| A practical guide to DNA-based methods for biodiversity assessment. K Bruce, RC Blackman, SJ Bourlat, M Hellström, J Bakker, I Bista, ... Pensoft Advanced Books, 2021 | 140 | 2021 |
| Application of high-throughput sequencing (HTS) metabarcoding to diatom biomonitoring: Do DNA extraction methods matter? V Vasselon, I Domaizon, F Rimet, M Kahlert, A Bouchez Freshwater Science 36 (1), 162-177, 2017 | 118 | 2017 |
| Metabarcoding of lake benthic diatoms: from structure assemblages to ecological assessment SF Rivera, V Vasselon, S Jacquet, A Bouchez, D Ariztegui, F Rimet Hydrobiologia 807, 37-51, 2018 | 109 | 2018 |
| R-Syst:: diatom: an open-access and curated barcode database for diatoms and freshwater monitoring F Rimet, P Chaumeil, F Keck, L Kermarrec, V Vasselon, M Kahlert, ... Database 2016, baw016, 2016 | 107 | 2016 |
| Key questions for next-generation biomonitoring A Makiola, ZG Compson, DJ Baird, MA Barnes, SP Boerlijst, A Bouchez, ... Frontiers in Environmental Science, 2020 | 95 | 2020 |
| Diatom DNA metabarcoding for biomonitoring: strategies to avoid major taxonomical and bioinformatical biases limiting molecular indices capacities K Tapolczai, F Keck, A Bouchez, F Rimet, M Kahlert, V Vasselon Frontiers in Ecology and Evolution 7, 409, 2019 | 88 | 2019 |
| Diatom DNA metabarcoding for ecological assessment: Comparison among bioinformatics pipelines used in six European countries reveals the need for standardization B Bailet, L Apothéloz-Perret-Gentil, A Baričević, T Chonova, A Franc, ... Science of The Total Environment, 140948, 2020 | 79 | 2020 |
| Applicability of DNA metabarcoding approach in the bioassessment of Portuguese rivers using diatoms A Mortágua, V Vasselon, R Oliveira, C Elias, C Chardon, A Bouchez, ... Ecological Indicators 106, 105470, 2019 | 75 | 2019 |
| Boosting DNA metabarcoding for biomonitoring with phylogenetic estimation of operational taxonomic units’ ecological profiles F Keck, V Vasselon, F Rimet, A Bouchez, M Kahlert Molecular Ecology Resources 18 (6), 1299-1309, 2018 | 70 | 2018 |
| Monitoring the ecological status of rivers with diatom eDNA metabarcoding: A comparison of taxonomic markers and analytical approaches for the inference of a molecular diatom index L Apothéloz‐Perret‐Gentil, A Bouchez, T Cordier, A Cordonier, ... Molecular Ecology 30 (13), 2959-2968, 2021 | 69 | 2021 |
| Assessing pollution of aquatic environments with diatoms' DNA metabarcoding: experience and developments from France Water Framework Directive networks V Vasselon, F Rimet, I Domaizon, O Monnier, Y Reyjol, A Bouchez Metabarcoding and Metagenomics 3, 2019 | 67 | 2019 |
| The impact of OTU sequence similarity threshold on diatom‐based bioassessment: A case study of the rivers of Mayotte (France, Indian Ocean) K Tapolczai, V Vasselon, A Bouchez, C Stenger‐Kovács, J Padisák, ... Ecology and evolution 9 (1), 166-179, 2019 | 62 | 2019 |
| Do we similarly assess diversity with microscopy and high-throughput sequencing? Case of microalgae in lakes F Rimet, V Vasselon, B A-Keszte, A Bouchez Organisms Diversity & Evolution 18 (1), 51-62, 2018 | 62 | 2018 |
| Evaluation and sensitivity analysis of diatom DNA metabarcoding for WFD bioassessment of Mediterranean rivers J Pérez-Burillo, R Trobajo, V Vasselon, F Rimet, A Bouchez, DG Mann Science of the Total Environment 727, 138445, 2020 | 61 | 2020 |
| Diatom metabarcoding applied to large scale monitoring networks: Optimization of bioinformatics strategies using Mothur software SF Rivera, V Vasselon, A Bouchez, F Rimet Ecological Indicators 109, 105775, 2020 | 61 | 2020 |
François KeckSwiss Federal Institute of Aquatic Science and Technology (Eawag) - Department of Aquatic EcologyEmail verificata su eawag.ch