| SteadyCom: predicting microbial abundances while ensuring community stability SHJ Chan, MN Simons, CD Maranas PLoS computational biology 13 (5), e1005539, 2017 | 211 | 2017 |
| Standardizing biomass reactions and ensuring complete mass balance in genome-scale metabolic models SHJ Chan, J Cai, L Wang, MN Simons-Senftle, CD Maranas Bioinformatics 33 (22), 3603-3609, 2017 | 117 | 2017 |
| Assessing the metabolic impact of nitrogen availability using a compartmentalized maize leaf genome-scale model M Simons, R Saha, N Amiour, A Kumar, L Guillard, G Clément, M Miquel, ... Plant Physiology 166 (3), 1659-1674, 2014 | 108 | 2014 |
| Farnesoid X receptor signaling shapes the gut microbiota and controls hepatic lipid metabolism L Zhang, C Xie, RG Nichols, SHJ Chan, C Jiang, R Hao, PB Smith, J Cai, ... MSystems 1 (5), 10.1128/msystems. 00070-16, 2016 | 104 | 2016 |
| Nitrogen-use efficiency in maize (Zea mays L.): from ‘omics’ studies to metabolic modelling M Simons, R Saha, L Guillard, G Clément, P Armengaud, R Cañas, ... Journal of experimental botany 65 (19), 5657-5671, 2014 | 100 | 2014 |
| Exploiting the genetic diversity of maize using a combined metabolomic, enzyme activity profiling, and metabolic modeling approach to link leaf physiology to kernel yield RA Cañas, Z Yesbergenova-Cuny, M Simons, F Chardon, P Armengaud, ... The Plant Cell 29 (5), 919-943, 2017 | 73 | 2017 |
| Genome-scale models of plant metabolism M Simons, A Misra, G Sriram Plant metabolism: methods and protocols, 213-230, 2014 | 15 | 2014 |
| A multi-organ maize metabolic model connects temperature stress with energy production and reducing power generation NB Chowdhury, M Simons-Senftle, B Decouard, I Quillere, M Rigault, ... IScience 26 (12), 2023 | 10 | 2023 |
| Computational modeling of microbial communities SHJ Chan, M Simons, CD Maranas Systems Biology 6, 163-189, 2017 | 7 | 2017 |
| Modeling plant metabolism: advancements and future capabilities MN Simons-Senftle, D Sarkar, CD Maranas Engineering Nitrogen Utilization in Crop Plants, 57-76, 2018 | 4 | 2018 |
| Steadycom: Modeling Microbial Communities Under Steady-State Growth SHJ Chan, M Simons-Senftle, CD Maranas 2017 AIChE Annual Meeting, 2017 | | 2017 |
| Uncovering and Correcting the Effect of Biomass Molecular Weight Discrepancies in FBA Calculations SHJ Chan, J Cai, L Wang, M Simons-Senftle, CD Maranas 2017 AIChE Annual Meeting, 2017 | | 2017 |
| Assessing Nitrogen Metabolism Using Genome-Scale Models in Maize M Simons Plant and Animal Genome XXIII Conference, 2015 | | 2015 |
| Assessing the Metabolic Impact of Nitrogen Availability Using a Compartmentalized Maize Leaf Genome-Scale Model1 [C][W][OPEN] M Simons, R Saha, N Amiour, A Kumar, L Guillard, G Clément, M Miquel, ... | | 2014 |