Matthew E Ritchie

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125 articoli

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Gordon K SmythDivision Head, Bioinformatics, Walter and Eliza Hall Institute of Medical ResearchEmail verificata su wehi.edu.au
Charity W LawThe Walter and Eliza Hall Institute of Medical ResearchEmail verificata su wehi.edu.au
Shian SuWalter and Eliza Hall InstituteEmail verificata su wehi.edu.au
Wei ShiProfessor, Monash Biomedicine Discovery Institute, Monash UniversityEmail verificata su monash.edu
Blewitt ME, Blewitt M, Champ MELaboratory head, Walter and Eliza Hall InstituteEmail verificata su wehi.edu.au
Quentin GouilOlivia Newton-John Cancer Research InstituteEmail verificata su onjcri.org.au
Xueyi DongWalter and Eliza Hall Institute of Medical ResearchEmail verificata su wehi.edu.au
Luyi TianGuangzhou LaboratoryEmail verificata su gzlab.ac.cn
Belinda PhipsonLaboratory Head, The Walter and Eliza Hall Institute of Medical ResearchEmail verificata su wehi.edu.au
Di WuAssociate Professor, Biostatistics Department, jointly with Adams Schools Dentistry at University ofEmail verificata su unc.edu
David CS HuangThe Walter and Eliza Hall Institute of Medical ResearchEmail verificata su wehi.edu.au
Simon TavaréColumbia UniversityEmail verificata su columbia.edu
Julie M SheridanThe Walter and Eliza Hall InstituteEmail verificata su wehi.edu.au
Ruijie (Cynthia) LiuSt Vincent's institute of medical researchEmail verificata su svi.edu.au
Monther Alhamdoosh, PhDCSL LimitedEmail verificata su csl.com.au
Peter HickeySenior Research Officer, Advanced Technology and Biology Division, WEHIEmail verificata su wehi.edu.au
Asselin-LabatThe Walter and Eliza Hall Institute of Medical ResearchEmail verificata su wehi.edu.au
Natasha JanszThe Peter Doherty Institute for Infection and Immunity, The University of MelbourneEmail verificata su mater.uq.edu.au
Mark J DunningUniversity of SheffieldEmail verificata su sheffield.ac.uk
Shalin H. NaikGroup Leader, WEHIEmail verificata su wehi.edu.au

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Matthew E Ritchie

The Walter and Eliza Hall Institute of Medical Research

Email verificata su wehi.edu.au - Home page

bioinformatics genomics


Titolo Ordina per citazioni Ordina per anno Ordina per titolo	Citata da Citata da	Anno
limma powers differential expression analyses for RNA-sequencing and microarray studies ME Ritchie, B Phipson, DI Wu, Y Hu, CW Law, W Shi, GK Smyth Nucleic acids research 43 (7), e47-e47, 2015	32552	2015
Opportunities and challenges in long-read sequencing data analysis SL Amarasinghe, S Su, X Dong, L Zappia, ME Ritchie, Q Gouil Genome biology 21 (1), 30, 2020	1508	2020
A comparison of background correction methods for two-colour microarrays ME Ritchie, J Silver, A Oshlack, M Holmes, D Diyagama, A Holloway, ... Bioinformatics 23 (20), 2700-2707, 2007	1144	2007
Apoptotic caspases suppress mtDNA-induced STING-mediated type I IFN production MJ White, K McArthur, D Metcalf, RM Lane, JC Cambier, MJ Herold, ... Cell 159 (7), 1549-1562, 2014	910	2014
RNA-seq analysis is easy as 1-2-3 with limma, Glimma and edgeR CW Law, M Alhamdoosh, S Su, X Dong, L Tian, GK Smyth, ME Ritchie F1000Research 5, ISCB Comm J-1408, 2018	816	2018
beadarray: R classes and methods for Illumina bead-based data MJ Dunning, ML Smith, ME Ritchie, S Tavaré Bioinformatics 23 (16), 2183-2184, 2007	580	2007
Why weight? Modelling sample and observational level variability improves power in RNA-seq analyses R Liu, AZ Holik, S Su, N Jansz, K Chen, HS Leong, ME Blewitt, ... Nucleic acids research 43 (15), e97-e97, 2015	521	2015
Empirical array quality weights in the analysis of microarray data ME Ritchie, D Diyagama, J Neilson, R van Laar, A Dobrovic, A Holloway, ... BMC bioinformatics 7, 1-16, 2006	331	2006
Targeting BCL-2 with the BH3 mimetic ABT-199 in estrogen receptor-positive breast cancer F Vaillant, D Merino, L Lee, K Breslin, B Pal, ME Ritchie, GK Smyth, ... Cancer cell 24 (1), 120-129, 2013	317	2013
Benchmarking single cell RNA-sequencing analysis pipelines using mixture control experiments L Tian, X Dong, S Freytag, KA Lê Cao, S Su, A JalalAbadi, ... Nature methods 16 (6), 479-487, 2019	307	2019
A re-annotation pipeline for Illumina BeadArrays: improving the interpretation of gene expression data NL Barbosa-Morais, MJ Dunning, SA Samarajiwa, JFJ Darot, ME Ritchie, ... Nucleic acids research 38 (3), e17-e17, 2010	288	2010
Microarray background correction: maximum likelihood estimation for the normal–exponential convolution JD Silver, ME Ritchie, GK Smyth Biostatistics 10 (2), 352-363, 2009	240	2009
Sensitization of BCL-2–expressing breast tumors to chemotherapy by the BH3 mimetic ABT-737 SR Oakes, F Vaillant, E Lim, L Lee, K Breslin, F Feleppa, S Deb, ... Proceedings of the National Academy of Sciences, 2011	233	2011
Synergy between the KEAP1/NRF2 and PI3K pathways drives non-small-cell lung cancer with an altered immune microenvironment SA Best, DP De Souza, A Kersbergen, AN Policheni, S Dayalan, D Tull, ... Cell metabolism 27 (4), 935-943. e4, 2018	201	2018
Combining multiple tools outperforms individual methods in gene set enrichment analyses M Alhamdoosh, M Ng, NJ Wilson, JM Sheridan, H Huynh, MJ Wilson, ... Bioinformatics 33 (3), 414-424, 2017	191	2017
Multidisciplinary diabetes care with and without bariatric surgery in overweight people: a randomised controlled trial JM Wentworth, J Playfair, C Laurie, ME Ritchie, WA Brown, P Burton, ... The lancet Diabetes & endocrinology 2 (7), 545-552, 2014	187	2014
Glimma: interactive graphics for gene expression analysis S Su, CW Law, C Ah-Cann, ML Asselin-Labat, ME Blewitt, ME Ritchie Bioinformatics 33 (13), 2050-2052, 2017	185	2017
The neuropeptide VIP confers anticipatory mucosal immunity by regulating ILC3 activity C Seillet, K Luong, J Tellier, N Jacquelot, RD Shen, P Hickey, VC Wimmer, ... Nature immunology 21 (2), 168-177, 2020	178	2020
Opposing roles of polycomb repressive complexes in hematopoietic stem and progenitor cells IJ Majewski, ME Ritchie, B Phipson, J Corbin, M Pakusch, A Ebert, ... Blood, The Journal of the American Society of Hematology 116 (5), 731-739, 2010	161	2010
Global changes in the mammary epigenome are induced by hormonal cues and coordinated by Ezh2 B Pal, T Bouras, W Shi, F Vaillant, JM Sheridan, N Fu, K Breslin, K Jiang, ... Cell reports 3 (2), 411-426, 2013	160	2013

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