| ComplexContact: a web server for inter-protein contact prediction using deep learning H Zeng*, S Wang*, T Zhou*, F Zhao, X Li, Q Wu, J Xu Nucleic acids research 46 (W1), W432-W437, 2018 | 144 | 2018 |
| Multiscale and integrative single-cell Hi-C analysis with Higashi R Zhang, T Zhou, J Ma Nature biotechnology 40 (2), 254-261, 2022 | 143 | 2022 |
| SpiceMix enables integrative single-cell spatial modeling of cell identity B Chidester*, T Zhou*, S Alam, J Ma Nature Genetics 55 (1), 78-88, 2023 | 58 | 2023 |
| Rotation equivariant and invariant neural networks for microscopy image analysis B Chidester, T Zhou, MN Do, J Ma Bioinformatics 35 (14), i530-i537, 2019 | 52 | 2019 |
| The 3D genome structure of single cells T Zhou*, R Zhang*, J Ma Annual review of biomedical data science 4, 21-41, 2021 | 49 | 2021 |
| Ultrafast and interpretable single-cell 3D genome analysis with Fast-Higashi R Zhang*, T Zhou*, J Ma Cell Systems 13 (10), 798-807. e6, 2022 | 32 | 2022 |
| Deep learning reveals many more inter-protein residue-residue contacts than direct coupling analysis T Zhou*, S Wang*, J Xu Annual International Conference on Research in Computational Molecular …, 2017 | 25 | 2017 |
| GAGE-seq concurrently profiles multiscale 3D genome organization and gene expression in single cells T Zhou, R Zhang, D Jia, RT Doty, AD Munday, D Gao, L Xin, JL Abkowitz, ... Nature Genetics, 1-11, 2024 | 23* | 2024 |