| Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage RS Hendriksen, P Munk, P Njage, B Van Bunnik, L McNally, ... Nature communications 10 (1), 1124, 2019 | 880* | 2019 |
| Clades of huge phages from across Earth’s ecosystems B Al-Shayeb, R Sachdeva, LX Chen, F Ward, P Munk, A Devoto, ... Nature 578 (7795), 425-431, 2020 | 469 | 2020 |
| Abundance and diversity of the faecal resistome in slaughter pigs and broilers in nine European countries P Munk, BE Knudsen, O Lukjacenko, ASR Duarte, L Van Gompel, ... Nature microbiology 3 (8), 898-908, 2018 | 313* | 2018 |
| Megaphages infect Prevotella and variants are widespread in gut microbiomes AE Devoto, JM Santini, MR Olm, K Anantharaman, P Munk, J Tung, ... Nature microbiology 4 (4), 693-700, 2019 | 182 | 2019 |
| Impact of sample type and DNA isolation procedure on genomic inference of microbiome composition BE Knudsen, L Bergmark, P Munk, O Lukjancenko, A Priemé, ... MSystems 1 (5), 10.1128/msystems. 00095-16, 2016 | 179 | 2016 |
| Genomic analysis of sewage from 101 countries reveals global landscape of antimicrobial resistance P Munk, C Brinch, FD Møller, TN Petersen, RS Hendriksen, AM Seyfarth, ... Nature Communications 13 (1), 7251, 2022 | 174 | 2022 |
| A sampling and metagenomic sequencing-based methodology for monitoring antimicrobial resistance in swine herds P Munk, VD Andersen, L de Knegt, MS Jensen, BE Knudsen, ... Journal of Antimicrobial Chemotherapy 72 (2), 385-392, 2016 | 104 | 2016 |
| Farm dust resistomes and bacterial microbiomes in European poultry and pig farms REC Luiken, L Van Gompel, A Bossers, P Munk, P Joosten, RB Hansen, ... Environment International 143, 105971, 2020 | 91 | 2020 |
| The antimicrobial resistome in relation to antimicrobial use and biosecurity in pig farming, a metagenome-wide association study in nine European countries L Van Gompel, REC Luiken, S Sarrazin, P Munk, BE Knudsen, ... Journal of Antimicrobial Chemotherapy, 2019 | 73 | 2019 |
| Associations between antimicrobial use and the faecal resistome on broiler farms from nine European countries REC Luiken, L Van Gompel, P Munk, S Sarrazin, P Joosten, ... Journal of Antimicrobial Chemotherapy, 2019 | 70 | 2019 |
| Genomic evolution of antimicrobial resistance in Escherichia coli P Leekitcharoenphon, MHK Johansson, P Munk, B Malorny, ... Scientific reports 11 (1), 15108, 2021 | 61 | 2021 |
| Setting a baseline for global urban virome surveillance in sewage DF Nieuwenhuijse, BB Oude Munnink, MVT Phan, P Munk, ... Scientific reports 10 (1), 13748, 2020 | 54 | 2020 |
| Description and determinants of the faecal resistome and microbiome of farmers and slaughterhouse workers: a metagenome-wide cross-sectional study L Van Gompel, REC Luiken, RB Hansen, P Munk, M Bouwknegt, L Heres, ... Environment international 143, 105939, 2020 | 51 | 2020 |
| Extended-spectrum beta-lactamase-producing Escherichia coli and antimicrobial resistance in municipal and hospital wastewaters in Czech Republic: Culture-based and metagenomic … I Kutilova, M Medvecky, P Leekitcharoenphon, P Munk, M Masarikova, ... Environmental Research 193, 110487, 2021 | 44 | 2021 |
| Secrets of the hospital underbelly: patterns of abundance of antimicrobial resistance genes in hospital wastewater vary by specific antimicrobial and bacterial family MR Perry, HC Lepper, L McNally, BA Wee, P Munk, A Warr, B Moore, ... Frontiers in Microbiology 12, 703560, 2021 | 43 | 2021 |
| The gut microbiome but not the resistome is associated with urogenital schistosomiasis in preschool-aged children DNM Osakunor, P Munk, T Mduluza, TN Petersen, C Brinch, A Ivens, ... Communications Biology 3 (1), 155, 2020 | 39 | 2020 |
| Pathogen surveillance in the informal settlement, Kibera, Kenya, using a metagenomics approach RS Hendriksen, O Lukjancenko, P Munk, MH Hjelmsø, JR Verani, ... PLoS One 14 (10), e0222531, 2019 | 33 | 2019 |
| Patterns of gene content and co-occurrence constrain the evolutionary path toward animal association in candidate phyla radiation bacteria AL Jaffe, AD Thomas, C He, R Keren, LE Valentin-Alvarado, P Munk, ... MBio 12 (4), 10.1128/mbio. 00521-21, 2021 | 31 | 2021 |
| Global Distribution of mcr Gene Variants in 214K Metagenomic Samples HM Martiny, P Munk, C Brinch, J Szarvas, FM Aarestrup, TN Petersen Msystems 7 (2), e00105-22, 2022 | 27 | 2022 |
| Addressing learning needs on the use of metagenomics in antimicrobial resistance surveillance ASR Duarte, KDC Stärk, P Munk, P Leekitcharoenphon, A Bossers, ... Frontiers in Public Health 8, 38, 2020 | 23 | 2020 |
Frank AarestrupTechnical University of Denmark, DTUEmail verificata su food.dtu.dk
