| Keyword search on external memory data graphs BB Dalvi, M Kshirsagar, S Sudarshan Proceedings of the VLDB Endowment 1 (1), 1189-1204, 2008 | 195 | 2008 |
| An epigenetic barrier sets the timing of human neuronal maturation G Ciceri, A Baggiolini, HS Cho, M Kshirsagar, S Benito-Kwiecinski, ... Nature 626 (8000), 881-890, 2024 | 105 | 2024 |
| Comparing recurrent convolutional neural networks for large scale bird species classification G Gupta, M Kshirsagar, M Zhong, S Gholami, JL Ferres Scientific reports 11 (1), 17085, 2021 | 104 | 2021 |
| Multitask learning for host–pathogen protein interactions M Kshirsagar, J Carbonell, J Klein-Seetharaman Bioinformatics 29 (13), i217-i226, 2013 | 97 | 2013 |
| Predicting the locations of cryptic pockets from single protein structures using the PocketMiner graph neural network A Meller, MD Ward, JH Borowsky, JM Lotthammer, M Kshirsagar, ... Biophysical journal 122 (3), 445a, 2023 | 91 | 2023 |
| Frame-semantic role labeling with heterogeneous annotations M Kshirsagar, S Thomson, N Schneider, J Carbonell, NA Smith, C Dyer Association of Computational Linguistics, 2015 | 83 | 2015 |
| BindSpace decodes transcription factor binding signals by large-scale sequence embedding H Yuan, M Kshirsagar, L Zamparo, Y Lu, CS Leslie Nature methods 16 (9), 858-861, 2019 | 43 | 2019 |
| Techniques to cope with missing data in host–pathogen protein interaction prediction M Kshirsagar, J Carbonell, J Klein-Seetharaman Bioinformatics 28 (18), i466-i472, 2012 | 43 | 2012 |
| Democratizing protein language models with parameter-efficient fine-tuning S Sledzieski, M Kshirsagar, M Baek, R Dodhia, J Lavista Ferres, B Berger Proceedings of the National Academy of Sciences 121 (26), e2405840121, 2024 | 26 | 2024 |
| Techniques for transferring host-pathogen protein interactions knowledge to new tasks M Kshirsagar, S Schleker, J Carbonell, J Klein-Seetharaman Frontiers in Microbiology, 63, 2015 | 23 | 2015 |
| Virus interactions with human signal transduction pathways Z Zhao, J Xia, O Tastan, I Singh, M Kshirsagar, J Carbonell, ... International journal of computational biology and drug design 4 (1), 83-105, 2011 | 22 | 2011 |
| Becoming good at AI for good M Kshirsagar, C Robinson, S Yang, S Gholami, I Klyuzhin, S Mukherjee, ... Proceedings of the 2021 AAAI/ACM Conference on AI, Ethics, and Society, 664-673, 2021 | 21 | 2021 |
| Comparing human–Salmonella with plant–Salmonella protein–protein interaction predictions S Schleker, M Kshirsagar, J Klein-Seetharaman Frontiers in Microbiology, 76, 2015 | 21 | 2015 |
| High precision web extraction using site knowledge M Kshirsagar, R Rastogi, SB Satpal, SH Sengamedu, V Satuluri US Patent App. 12/416,381, 2010 | 17 | 2010 |
| Multitask matrix completion for learning protein interactions across diseases M Kshirsagar, JG Carbonell, J Klein-Seetharaman, K Murugesan International Conference on Research in Computational Molecular Biology …, 2016 | 16 | 2016 |
| Estimating vaccine-preventable COVID-19 deaths under counterfactual vaccination scenarios in the United States M Zhong, M Kshirsagar, R Johnston, R Dodhia, T Glazer, A Kim, ... medRxiv, 2022.05. 19.22275310, 2022 | 15 | 2022 |
| Multisource transfer learning for host-pathogen protein interaction prediction in unlabeled tasks M Kshirsagar, J Carbonell, J Klein-Seetharaman Machine learning for computational biology workshop, Neural Information …, 2013 | 15 | 2013 |
| BindVAE: Dirichlet variational autoencoders for de novo motif discovery from accessible chromatin M Kshirsagar, H Yuan, JL Ferres, C Leslie Genome biology 23 (1), 174, 2022 | 14 | 2022 |
| Automatic extraction using machine learning based robust structural extractors AS Kirpal, SB Satpal, M Kshirsagar, SH Sengamedu US Patent App. 12/395,586, 2010 | 14 | 2010 |
| An analysis of the deployment of models trained on private tabular synthetic data: Unexpected surprises M Pereira, M Kshirsagar, S Mukherjee, R Dodhia, JL Ferres arXiv preprint arXiv:2106.10241, 2021 | 12 | 2021 |
Judith Klein-SeetharamanArizona State UniversityEmail verificata su asu.edu
