Articoli con mandati relativi all'accesso pubblico - Thomas BrettinUlteriori informazioni
Non disponibile pubblicamente: 1
The genome of Polaromonas naphthalenivorans strain CJ2, isolated from coal tar‐contaminated sediment, reveals physiological and metabolic versatility and …
JM Yagi, D Sims, T Brettin, D Bruce, EL Madsen
Environmental microbiology 11 (9), 2253-2270, 2009
Mandati: US National Institutes of Health
Disponibili pubblicamente: 133
RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes
T Brettin, JJ Davis, T Disz, RA Edwards, S Gerdes, GJ Olsen, R Olson, ...
Scientific reports 5 (1), 1-6, 2015
Mandati: US Department of Energy, US National Institutes of Health, US National …
Improvements to PATRIC, the all-bacterial bioinformatics database and analysis resource center
AR Wattam, JJ Davis, R Assaf, S Boisvert, T Brettin, C Bun, N Conrad, ...
Nucleic acids research 45 (D1), D535-D542, 2017
Mandati: US Department of Energy, US National Institutes of Health
Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina)
D Martinez, RM Berka, B Henrissat, M Saloheimo, M Arvas, SE Baker, ...
Nature biotechnology 26 (5), 553-560, 2008
Mandati: US National Institutes of Health
KBase: the United States department of energy systems biology knowledgebase
AP Arkin, RW Cottingham, CS Henry, NL Harris, RL Stevens, S Maslov, ...
Nature biotechnology 36 (7), 566-569, 2018
Mandati: US Department of Energy
The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities
JJ Davis, AR Wattam, RK Aziz, T Brettin, R Butler, RM Butler, P Chlenski, ...
Nucleic acids research 48 (D1), D606-D612, 2020
Mandati: US Department of Energy, US National Institutes of Health
Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion
D Martinez, J Challacombe, I Morgenstern, D Hibbett, M Schmoll, ...
Proceedings of the National Academy of Sciences 106 (6), 1954-1959, 2009
Mandati: US National Institutes of Health
Introducing the bacterial and viral bioinformatics resource center (BV-BRC): a resource combining PATRIC, IRD and ViPR
RD Olson, R Assaf, T Brettin, N Conrad, C Cucinell, JJ Davis, ...
Nucleic acids research 51 (D1), D678-D689, 2023
Mandati: US Department of Energy, US National Institutes of Health
Comparative genomics reveals mechanism for short-term and long-term clonal transitions in pandemic Vibrio cholerae
J Chun, CJ Grim, NA Hasan, JH Lee, SY Choi, BJ Haley, E Taviani, ...
Proceedings of the National Academy of Sciences 106 (36), 15442-15447, 2009
Mandati: US National Institutes of Health
The complete genome sequence of Moorella thermoacetica (f. Clostridium thermoaceticum)
E Pierce, G Xie, RD Barabote, E Saunders, CS Han, JC Detter, ...
Environmental microbiology 10 (10), 2550-2573, 2008
Mandati: US National Institutes of Health
Temperature regulation of virulence factors in the pathogen Vibrio coralliilyticus
NE Kimes, CJ Grim, WR Johnson, NA Hasan, BD Tall, MH Kothary, H Kiss, ...
The ISME journal 6 (4), 835-846, 2012
Mandati: US National Institutes of Health
Antimicrobial resistance prediction in PATRIC and RAST
JJ Davis, S Boisvert, T Brettin, RW Kenyon, C Mao, R Olson, R Overbeek, ...
Scientific reports 6 (1), 27930, 2016
Mandati: US Department of Energy, US National Institutes of Health
Phylogeographic reconstruction of a bacterial species with high levels of lateral gene transfer
T Pearson, P Giffard, S Beckstrom-Sternberg, R Auerbach, H Hornstra, ...
BMC biology 7, 1-14, 2009
Mandati: US National Institutes of Health
Whole-genome sequencing of human clinical Klebsiella pneumoniae isolates reveals misidentification and misunderstandings of Klebsiella pneumoniae, Klebsiella variicola, and …
SW Long, SE Linson, M Ojeda Saavedra, C Cantu, JJ Davis, T Brettin, ...
Msphere 2 (4), 10.1128/mspheredirect. 00290-17, 2017
Mandati: US Department of Energy, US National Institutes of Health
Converting tabular data into images for deep learning with convolutional neural networks
Y Zhu, T Brettin, F Xia, A Partin, M Shukla, H Yoo, YA Evrard, ...
Scientific reports 11 (1), 11325, 2021
Mandati: US Department of Energy, US National Institutes of Health
Developing an in silico minimum inhibitory concentration panel test for Klebsiella pneumoniae
M Nguyen, T Brettin, SW Long, JM Musser, RJ Olsen, R Olson, M Shukla, ...
Scientific reports 8 (1), 421, 2018
Mandati: US Department of Energy, US National Institutes of Health
Population Genomic Analysis of 1,777 Extended-Spectrum Beta-Lactamase-Producing Klebsiella pneumoniae Isolates, Houston, Texas: Unexpected Abundance …
SW Long, RJ Olsen, TN Eagar, SB Beres, P Zhao, JJ Davis, T Brettin, ...
MBio 8 (3), 10.1128/mbio. 00489-17, 2017
Mandati: US Department of Energy, US National Institutes of Health
Analysis of Ten Brucella Genomes Reveals Evidence for Horizontal Gene Transfer Despite a Preferred Intracellular Lifestyle
AR Wattam, KP Williams, EE Snyder, NF Almeida Jr, M Shukla, ...
Journal of bacteriology 191 (11), 3569-3579, 2009
Mandati: US National Institutes of Health
Recombination and insertion events involving the botulinum neurotoxin complex genes in Clostridium botulinum types A, B, E and F and Clostridium butyricumtype …
KK Hill, G Xie, BT Foley, TJ Smith, AC Munk, D Bruce, LA Smith, TS Brettin, ...
BMC biology 7, 1-18, 2009
Mandati: US National Institutes of Health
Predicting tumor cell line response to drug pairs with deep learning
F Xia, M Shukla, T Brettin, C Garcia-Cardona, J Cohn, JE Allen, S Maslov, ...
BMC bioinformatics 19, 71-79, 2018
Mandati: US Department of Energy, US National Institutes of Health
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