Thomas Abeel

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Ashlee EarlBroad Institute of MIT & HarvardEmail verificata su broadinstitute.org
Yves Van de PeerProfessor in Bioinformatics and Genome Biology, Ghent University, BelgiumEmail verificata su psb.ugent.be
Yvan SaeysVIB - Ghent UniversityEmail verificata su ugent.be
Abigail L. MansonBroad Institute of MIT and HarvardEmail verificata su broadinstitute.org
Alex N. SalazarPhD Candidate, Delft University of TechnologyEmail verificata su tudelft.nl
Jennifer WortmanVice President, Clinical Discovery and Research Technologies, Seres TherapeuticsEmail verificata su serestherapeutics.com
Christina A. CuomoBrown UniversityEmail verificata su brown.edu
Pierre RouzéVIB Plant Systems Biology, U. Ghent, ,BelgiumEmail verificata su psb.ugent.be
James GalaganAssociate Professor, Boston UniversityEmail verificata su bu.edu
A PymAfrica Health Research Institute (AHRI)Email verificata su wellcome.org
Thies GehrmannPostDoc, University of AntwerpenEmail verificata su uantwerpen.be
Max O'DonnellColumbia University Medical CenterEmail verificata su columbia.edu
Pierre DupontProfessor of Computer Science, ICTEAM, EPL, Université catholique de LouvainEmail verificata su uclouvain.be
Geoff MacintyreComputational Oncology Group Leader, CNIO, Madrid, SpainEmail verificata su cnio.es
Jeremy ZuckerPacific Northwest National LaboratoryEmail verificata su pnnl.gov
Ken S HeyndrickxInari AgricultureEmail verificata su inari.com
Klaas VandepoeleFull Professor, Ghent University - Group leader VIB Center for Plant Systems BiologyEmail verificata su psb.vib-ugent.be
Dirk InzeHoogleraar plantenbiotechnologie, Universiteit GentEmail verificata su psb.ugent.be
Jelle Van LeeneUniversiteit Gent/Vlaams Instituut BiotechnologieEmail verificata su psb.vib-ugent.be
Sofie Van LandeghemFreelance NLP & ML expertEmail verificata su oxykodit.com

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Thomas Abeel

Associate Professor at TU Delft - Visiting Scientist at Broad Institute of MIT and Harvard

Email verificata su broadinstitute.org - Home page

Sequence analysis microbial genomics machine learning


Titolo Ordina per citazioni Ordina per anno Ordina per titolo	Citata da Citata da	Anno
Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement BJ Walker, T Abeel, T Shea, M Priest, A Abouelliel, S Sakthikumar, ... PloS one 9 (11), e112963, 2014	7902	2014
Robust feature selection using ensemble feature selection techniques Y Saeys, T Abeel, Y Van de Peer Machine Learning and Knowledge Discovery in Databases: European Conference …, 2008	914	2008
Robust biomarker identification for cancer diagnosis with ensemble feature selection methods T Abeel, T Helleputte, Y Van de Peer, P Dupont, Y Saeys Bioinformatics 26 (3), 392-398, 2010	756	2010
The Mycobacterium tuberculosis regulatory network and hypoxia JE Galagan, K Minch, M Peterson, A Lyubetskaya, E Azizi, L Sweet, ... Nature 499 (7457), 178-183, 2013	497	2013
Computational pan-genomics: status, promises and challenges Briefings in bioinformatics 19 (1), 118-135, 2018	369	2018
Evolution of Extensively Drug-Resistant Tuberculosis over Four Decades: Whole Genome Sequencing and Dating Analysis of Mycobacterium tuberculosis Isolates … KA Cohen, T Abeel, A Manson McGuire, CA Desjardins, V Munsamy, ... PLoS medicine 12 (9), e1001880, 2015	320	2015
Genomic analysis of globally diverse Mycobacterium tuberculosis strains provides insights into the emergence and spread of multidrug resistance AL Manson, KA Cohen, T Abeel, CA Desjardins, DT Armstrong, ... Nature genetics 49 (3), 395-402, 2017	309	2017
Generic eukaryotic core promoter prediction using structural features of DNA T Abeel, Y Saeys, E Bonnet, P Rouzé, Y Van de Peer Genome research 18 (2), 310-323, 2008	251	2008
ANGUSTIFOLIA3 Binds to SWI/SNF Chromatin Remodeling Complexes to Regulate Transcription during Arabidopsis Leaf Development L Vercruyssen, A Verkest, N Gonzalez, KS Heyndrickx, D Eeckhout, ... The Plant Cell 26 (1), 210-229, 2014	230	2014
Genomic and functional analyses of Mycobacterium tuberculosis strains implicate ald in D-cycloserine resistance CA Desjardins, KA Cohen, V Munsamy, T Abeel, K Maharaj, BJ Walker, ... Nature genetics 48 (5), 544-551, 2016	202	2016
Java-ml: A machine learning library T Abeel, Y Van de Peer, Y Saeys Journal of Machine Learning Research 10, 931-934, 2009	197	2009
ORCAE: online resource for community annotation of eukaryotes L Sterck, K Billiau, T Abeel, P Rouze, Y Van de Peer Nature methods 9 (11), 1041-1041, 2012	187	2012
GenomeView: a next-generation genome browser T Abeel, T Van Parys, Y Saeys, J Galagan, Y Van de Peer Nucleic Acids Research 40 (2), e12-e12, 2012	170	2012
Deciphering drug resistance in Mycobacterium tuberculosis using whole-genome sequencing: progress, promise, and challenges KA Cohen, AL Manson, CA Desjardins, T Abeel, AM Earl Genome medicine 11 (1), 45, 2019	155	2019
Comparative and Functional Genomics of Rhodococcus opacus PD630 for Biofuels Development JW Holder, JC Ulrich, AC DeBono, PA Godfrey, CA Desjardins, J Zucker, ... PLoS Genetics 7 (9), e1002219, 2011	152	2011
Evolution of Invasion in a Diverse Set of Fusobacterium Species A Manson McGuire, K Cochrane, AD Griggs, BJ Haas, T Abeel, Q Zeng, ... MBio 5 (6), 10.1128/mbio. 01864-14, 2014	114*	2014
Comparative analysis of mycobacterium and related actinomycetes yields insight into the evolution of mycobacterium tuberculosis pathogenesis AM McGuire, B Weiner, ST Park, I Wapinski, S Raman, G Dolganov, ... BMC genomics 13, 1-27, 2012	114	2012
Computational methods for strain-level microbial detection in colony and metagenome sequencing data C Anyansi, TJ Straub, AL Manson, AM Earl, T Abeel Frontiers in Microbiology 11, 1925, 2020	109	2020
Nanopore sequencing enables near-complete de novo assembly of Saccharomyces cerevisiae reference strain CEN.PK113-7D AN Salazar, AR Gorter de Vries, M van den Broek, M Wijsman, ... FEMS Yeast Research 17 (7), fox074, 2017	105	2017
ProSOM: core promoter prediction based on unsupervised clustering of DNA physical profiles T Abeel, Y Saeys, P Rouzé, Y Van de Peer Bioinformatics 24 (13), i24-i31, 2008	105	2008

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