Thomas Nordahl Petersen

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Søren BrunakProfessor of Disease Systems Biology, University of CopenhagenEmail verificata su cpr.ku.dk
Frank AarestrupTechnical University of Denmark, DTUEmail verificata su food.dtu.dk
Gunnar von HeijneStockholm UniversityEmail verificata su dbb.su.se
Ole LundTechnical University of DenmarkEmail verificata su dtu.dk
Henrik NielsenAssociate Professor, Department of Health Technology, Technical University of DenmarkEmail verificata su dtu.dk
Morten NielsenDepartment of Health Technology, The Technical University ofEmail verificata su cbs.dtu.dk
Claus LundegaardDirector, ZS Associates, DiscoveryEmail verificata su zs.com
Nikolaj Sorgenfrei BlomSenior Researcher, DTUEmail verificata su dtu.dk
Thomas Sicheritz-PontenProfessor in Computational Phage Biodiscovery, University of CopenhagenEmail verificata su sund.ku.dk
Simon RasmussenProfessor, University of CopenhagenEmail verificata su sund.ku.dk
Bent PetersenSenior Researcher, PhD, Globe institute, University of CopenhagenEmail verificata su sund.ku.dk
Henrik Georg BohrAssociate Professor of Molecular Biophysics, Technical University of Denmark, Quantum Protein CenterEmail verificata su fysik.dtu.dk
Jakob BohrProfessor, DTU Nanotech, Technical University of DenmarkEmail verificata su nanotech.dtu.dk
Henrik M. Geertz-Hansen21st.BIOEmail verificata su 21st.bio
Martin C F ThomsenPhD studentEmail verificata su cbs.dtu.dk
Michael GajhedeProfessor i proteinkrystallografi, Københavns UniversitetEmail verificata su sund.ku.dk
Adam FeistUC San Diego (UCSD) / Technical University of Denmark (DTU)Email verificata su ucsd.edu
Katrine SchjoldagerCopenhagen Center for Glycomics, University of CopenhagenEmail verificata su sund.ku.dk
Ramneek GuptaNovo Nordisk Research Centre OxfordEmail verificata su novonordisk.com
Jose M G IzarzugazaNovo Nordisk, Bioinformatics and Data Mining DepartmentEmail verificata su novonordisk.com

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Thomas Nordahl Petersen

DTU Food, National Food Institute, Denmark

Email verificata su food.dtu.dk

Metagenomics neural networks anti-microbial resistance


Titolo Ordina per citazioni Ordina per anno Ordina per titolo	Citata da Citata da	Anno
SignalP 4.0: discriminating signal peptides from transmembrane regions TN Petersen, S Brunak, G Von Heijne, H Nielsen Nature methods 8 (10), 785-786, 2011	10229	2011
SignalP 5.0 improves signal peptide predictions using deep neural networks JJ Almagro Armenteros, KD Tsirigos, CK Sønderby, TN Petersen, ... Nature biotechnology 37 (4), 420-423, 2019	4055	2019
Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage RS Hendriksen, P Munk, P Njage, B Van Bunnik, L McNally, ... Nature communications 10 (1), 1124, 2019	854	2019
A generic method for assignment of reliability scores applied to solvent accessibility predictions B Petersen, TN Petersen, P Andersen, M Nielsen, C Lundegaard BMC structural biology 9, 1-10, 2009	738	2009
Detection of mobile genetic elements associated with antibiotic resistance in Salmonella enterica using a newly developed web tool: MobileElementFinder MHK Johansson, V Bortolaia, S Tansirichaiya, FM Aarestrup, AP Roberts, ... Journal of Antimicrobial Chemotherapy 76 (1), 101-109, 2021	455	2021
CPHmodels-3.0—remote homology modeling using structure-guided sequence profiles M Nielsen, C Lundegaard, O Lund, TN Petersen Nucleic acids research 38 (suppl_2), W576-W581, 2010	444	2010
Improved metagenome binning and assembly using deep variational autoencoders JN Nissen, J Johansen, RL Allesøe, CK Sønderby, JJA Armenteros, ... Nature biotechnology 39 (5), 555-560, 2021	395	2021
Abundance and diversity of the faecal resistome in slaughter pigs and broilers in nine European countries P Munk, BE Knudsen, O Lukjancenko, ASR Duarte, L Van Gompel, ... Nature microbiology 3 (8), 898-908, 2018	310	2018
Prediction of protein secondary structure at 80% accuracy TN Petersen, C Lundegaard, M Nielsen, H Bohr, J Bohr, S Brunak, ... Proteins: Structure, Function, and Bioinformatics 41 (1), 17-20, 2000	209	2000
The crystal structure of rhamnogalacturonase A from Aspergillus aculeatus: a right-handed parallel β helix TN Petersen, S Kauppinen, S Larsen Structure 5 (4), 533-544, 1997	183	1997
Genomic analysis of sewage from 101 countries reveals global landscape of antimicrobial resistance P Munk, C Brinch, FD Møller, TN Petersen, RS Hendriksen, AM Seyfarth, ... Nature Communications 13 (1), 7251, 2022	174	2022
A systematic study of site-specific GalNAc-type O-glycosylation modulating proprotein convertase processing KTBG Schjoldager, MB Vester-Christensen, CK Goth, TN Petersen, ... Journal of Biological Chemistry 286 (46), 40122-40132, 2011	116	2011
NetTurnP–neural network prediction of beta-turns by use of evolutionary information and predicted protein sequence features B Petersen, C Lundegaard, TN Petersen PloS one 5 (11), e15079, 2010	112	2010
Meta-genomic analysis of toilet waste from long distance flights; a step towards global surveillance of infectious diseases and antimicrobial resistance T Nordahl Petersen, S Rasmussen, H Hasman, C Carøe, J Bælum, ... Scientific reports 5 (1), 11444, 2015	100	2015
Norgal: extraction and de novo assembly of mitochondrial DNA from whole-genome sequencing data K Al-Nakeeb, TN Petersen, T Sicheritz-Pontén BMC bioinformatics 18, 1-7, 2017	85	2017
MGmapper: reference based mapping and taxonomy annotation of metagenomics sequence reads TN Petersen, O Lukjancenko, MCF Thomsen, M Maddalena Sperotto, ... PloS one 12 (5), e0176469, 2017	84	2017
Pancreatic spasmolytic polypeptide: first three-dimensional structure of a member of the mammalian trefoil family of peptides M Gajhede, TN Petersen, A Henriksen, JFW Petersen, Z Dauter, ... Structure 1 (4), 253-262, 1993	82	1993
Midbrain expression of Delta-like 1 homologue is regulated by GDNF and is associated with dopaminergic differentiation NS Christophersen, M Grønborg, TN Petersen, L Fjord-Larsen, ... Experimental neurology 204 (2), 791-801, 2007	76	2007
Cofactory: Sequence‐based prediction of cofactor specificity of Rossmann folds HM Geertz‐Hansen, N Blom, AM Feist, S Brunak, TN Petersen Proteins: Structure, Function, and Bioinformatics 82 (9), 1819-1828, 2014	61	2014
Metagenomics-based approach to source-attribution of antimicrobial resistance determinants–identification of reservoir resistome signatures ASR Duarte, T Röder, L Van Gompel, TN Petersen, RB Hansen, ... Frontiers in microbiology 11, 601407, 2021	56	2021

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