| Global metabolite analysis: the influence of extraction methodology on metabolome profiles of Escherichia coli RP Maharjan, T Ferenci Analytical biochemistry 313 (1), 145-154, 2003 | 480 | 2003 |
| Global population structure and evolution of Bordetella pertussis and their relationship with vaccination MJ Bart, SR Harris, A Advani, Y Arakawa, D Bottero, V Bouchez, ... MBio 5 (2), 10.1128/mbio. 01074-14, 2014 | 328 | 2014 |
| Clonal adaptive radiation in a constant environment R Maharjan, S Seeto, L Notley-McRobb, T Ferenci Science 313 (5786), 514-517, 2006 | 197 | 2006 |
| Divergence Involving Global Regulatory Gene Mutations in an Escherichia coli Population Evolving under Phosphate Limitation L Wang, B Spira, Z Zhou, L Feng, RP Maharjan, X Li, F Li, C McKenzie, ... Genome biology and evolution 2, 478-487, 2010 | 101 | 2010 |
| A shifting mutational landscape in 6 nutritional states: Stress-induced mutagenesis as a series of distinct stress input–mutation output relationships RP Maharjan, T Ferenci PLoS biology 15 (6), e2001477, 2017 | 95 | 2017 |
| Insight into Evolution of Bordetella pertussis from Comparative Genomic Analysis: Evidence of Vaccine-Driven Selection S Octavia, RP Maharjan, V Sintchenko, G Stevenson, PR Reeves, ... Molecular biology and evolution 28 (1), 707-715, 2011 | 95 | 2011 |
| How antibiotics work together: molecular mechanisms behind combination therapy GJ Sullivan, NN Delgado, R Maharjan, AK Cain Current opinion in microbiology 57, 31-40, 2020 | 89 | 2020 |
| The form of a trade‐off determines the response to competition R Maharjan, S Nilsson, J Sung, K Haynes, RE Beardmore, LD Hurst, ... Ecology letters 16 (10), 1267-1276, 2013 | 86 | 2013 |
| Metabolome analyses:: strategies for systems biology S Vaidyanathan, GG Harrigan, R Goodacre Springer Science & Business Media, 2006 | 81 | 2006 |
| The multiplicity of divergence mechanisms in a single evolving population RP Maharjan, T Ferenci, PR Reeves, Y Li, B Liu, L Wang Genome biology 13, 1-16, 2012 | 68 | 2012 |
| Insertion Sequence-Driven Evolution of Escherichia coli in Chemostats J Gaffé, C McKenzie, RP Maharjan, E Coursange, T Ferenci, D Schneider Journal of molecular evolution 72, 398-412, 2011 | 67 | 2011 |
| The nature of laboratory domestication changes in freshly isolated Escherichia coli strains G Eydallin, B Ryall, R Maharjan, T Ferenci Environmental Microbiology 16 (3), 813-828, 2014 | 64 | 2014 |
| The role of isocitrate lyase and the glyoxylate cycle in Escherichia coli growing under glucose limitation RP Maharjan, PL Yu, S Seeto, T Ferenci Research in microbiology 156 (2), 178-183, 2005 | 62 | 2005 |
| Cross-protection and cross-feeding between Klebsiella pneumoniae and Acinetobacter baumannii promotes their co-existence L Semenec, AK Cain, CJ Dawson, Q Liu, H Dinh, H Lott, A Penesyan, ... Nature communications 14 (1), 702, 2023 | 61 | 2023 |
| Divergence and Redundancy of Transport and Metabolic Rate-Yield Strategies in a Single Escherichia coli Population RP Maharjan, S Seeto, T Ferenci Journal of bacteriology 189 (6), 2350-2358, 2007 | 61 | 2007 |
| The uncertain consequences of transferring bacterial strains between laboratories - rpoSinstability as an example B Spira, R de Almeida Toledo, RP Maharjan, T Ferenci BMC microbiology 11, 1-9, 2011 | 57 | 2011 |
| The fitness costs and benefits of antibiotic resistance in drug‐free microenvironments encountered in the human body R Maharjan, T Ferenci Environmental Microbiology Reports 9 (5), 635-641, 2017 | 50 | 2017 |
| Bordetella pertussis clones identified by multilocus variable-number tandem-repeat analysis J Kurniawan, RP Maharjan, WF Chan, PR Reeves, V Sintchenko, ... Emerging infectious diseases 16 (2), 297, 2010 | 48 | 2010 |
| Mutational signatures indicative of environmental stress in bacteria R Maharjan, T Ferenci Molecular biology and evolution 32 (2), 380-391, 2015 | 46 | 2015 |
| Natural Escherichia coli isolates rapidly acquire genetic changes upon laboratory domestication B Liu, G Eydallin, RP Maharjan, L Feng, L Wang, T Ferenci Microbiology 163 (1), 22-30, 2017 | 39 | 2017 |
