Matthew MacManes

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Manfred GrabherrAssociate Professor, Inland Norway University of Applied SciencesEmail verificata su inn.no
Alexie PapanicolaouAssociate Professor, Hawkesbury Institute for the Environment, Western SydneyEmail verificata su westernsydney.edu.au
Joshua OrvisInstitute for Genome Sciences & Johns HopkinsEmail verificata su som.umaryland.edu
Nir FriedmanProfessor of Computer Science and Medicine, Hebrew UniversityEmail verificata su mail.huji.ac.il
Richard LeDucBioinformatics Platform Director, Children's Hospital Research Institute of ManitobaEmail verificata su chrim.ca
Brian HaasBroad InstituteEmail verificata su broadinstitute.org
Colin DeweyProfessor of Biostatistics and Medical Informatics, University of Wisconsin-MadisonEmail verificata su biostat.wisc.edu
Francesco StrozziiTeos TherapeuticsEmail verificata su iteostherapeutics.com
Matthew Brian CougerBrigham and Women's Hospital / Harvard Medical SchoolEmail verificata su bwh.harvard.edu
Joshua C BowdenCSIROEmail verificata su csiro.au
Robert HenschelIndiana University, Technische Universität Dresden, Technical University Dresden, Dresden University of TechnologyEmail verificata su iu.edu
Rebecca M. CalisiAssociate Professor of Neurobiology, Physiology and Behavior, University of California, DavisEmail verificata su ucdavis.edu
Moran YassourThe Hebrew University of JerusalemEmail verificata su mail.huji.ac.il
Bo LiPrincipal Scientist, Biology Research | AI Development, gRED Computational Sciences, GenentechEmail verificata su gene.com
David Andrew EcclesBioinformatics Research Analyst, Gringene BioinformaticsEmail verificata su gringene.org
Suzanne H. AustinOregon State UniversityEmail verificata su oregonstate.edu
Kyle SummersEast Carolina UniversityEmail verificata su ecu.edu
Tyler LinderothMichigan State University, W.K. Kellogg Biological StationEmail verificata su msu.edu
Anna Tigano, Ph.D.Bioinformatics Biologist, Department of Fisheries and OceansEmail verificata su dfo-mpo.gc.ca
Victoria FarrarNSF postdoctoral fellow, University of IllinoisEmail verificata su illinois.edu

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Matthew MacManes

University of New Hampshire

Email verificata su unh.edu - Home page

Evolutionary Physiology and Genomics


Titolo Ordina per citazioni Ordina per anno Ordina per titolo	Citata da Citata da	Anno
De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis BJ Haas, A Papanicolaou, M Yassour, M Grabherr, PD Blood, J Bowden, ... Nature protocols 8 (8), 1494-1512, 2013	8323	2013
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species KR Bradnam, JN Fass, A Alexandrov, P Baranay, M Bechner, I Birol, ... Gigascience 2 (1), 2047-217X-2-10, 2013	821	2013
On the optimal trimming of high-throughput mRNA sequence data MD MacManes Frontiers in genetics 5, 13, 2014	241	2014
Comparative genomics explains the evolutionary success of reef-forming corals D Bhattacharya, S Agrawal, M Aranda, S Baumgarten, M Belcaid, ... eLife, 2016	193	2016
Museum genomics: low‐cost and high‐accuracy genetic data from historical specimens KC Rowe, S Singhal, MD Macmanes, JF Ayroles, TL Morelli, EM Rubidge, ... Molecular Ecology Resources 11 (6), 1082-1092, 2011	161	2011
Dynamic pigmentary and structural coloration within cephalopod chromatophore organs TL Williams, SL Senft, J Yeo, FJ Martín-Martínez, AM Kuzirian, CA Martin, ... Nature communications 10 (1), 1004, 2019	151	2019
The Oyster River Protocol: a multi-assembler and kmer approach for de novo transcriptome assembly MD MacManes PeerJ 6, e5428, 2018	118	2018
Genomic takeover by transposable elements in the strawberry poison frog RL Rogers, L Zhou, C Chu, R Márquez, A Corl, T Linderoth, L Freeborn, ... Molecular Biology and Evolution 35 (12), 2913-2927, 2018	72	2018
A total crapshoot? Evaluating bioinformatic decisions in animal diet metabarcoding analyses DR O'Rourke, NA Bokulich, MA Jusino, MD MacManes, JT Foster Ecology and Evolution 10 (18), 9721-9739, 2020	68	2020
Widespread patterns of sexually dimorphic gene expression in an avian hypothalamic–pituitary–gonadal (HPG) axis MD MacManes, SH Austin, AS Lang, A Booth, V Farrar, RM Calisi Scientific reports 7 (1), 45125, 2017	55	2017
Improving transcriptome assembly through error correction of high-throughput sequence reads MD MacManes, MB Eisen PeerJ 1, e113, 2013	53	2013
PALADIN: protein alignment for functional profiling whole metagenome shotgun data A Westbrook, J Ramsdell, T Schuelke, L Normington, RD Bergeron, ... Bioinformatics 33 (10), 1473-1478, 2017	51	2017
Comparative and population genomics approaches reveal the basis of adaptation to deserts in a small rodent A Tigano, JP Colella, MD MacManes Molecular ecology 29 (7), 1300-1314, 2020	48	2020
Severe acute dehydration in a desert rodent elicits a transcriptional response that effectively prevents kidney injury MD MacManes American Journal of Physiology-Renal Physiology 313 (2), F262-F272, 2017	48	2017
Variation in pigmentation gene expression is associated with distinct aposematic color morphs in the poison frog Dendrobates auratus AMM Stuckert, E Moore, KP Coyle, I Davison, MD MacManes, R Roberts, ... BMC Evolutionary Biology 19, 1-15, 2019	47	2019
Characterization of the transcriptome, nucleotide sequence polymorphism, and natural selection in the desert adapted mouse Peromyscus eremicus MD MacManes, MB Eisen PeerJ 2, e642, 2014	44	2014
Establishing evidenced-based best practice for the de novo assembly and evaluation of transcriptomes from non-model organisms MD MacManes BioRxiv, 035642, 2015	38*	2015
Isolation and characterization of polymorphic microsatellite loci from Octodon degus YF Quan, MD Macmanes, LA Ebensperger, EA Lacey, LD Hayes Molecular Ecology Resources 9 (3), 999-1001, 2009	35	2009
Brain transcriptional profiles of male alternative reproductive tactics and females in bluegill sunfish CG Partridge, MD MacManes, R Knapp, BD Neff PLoS One 11 (12), e0167509, 2016	34	2016
RETRACTED: The genomics of mimicry: Gene expression throughout development provides insights into convergent and divergent phenotypes in a Müllerian mimicry system AMM Stuckert, M Chouteau, M McClure, TM LaPolice, T Linderoth, ... Molecular Ecology 30 (16), 4039-4061, 2021	32	2021

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