| Lytic to temperate switching of viral communities B Knowles, CB Silveira, BA Bailey, K Barott, VA Cantu, ... Nature 531 (7595), 466-470, 2016 | 585 | 2016 |
| Robust taxonomic classification of uncharted microbial sequences and bins with CAT and BAT FAB Von Meijenfeldt, K Arkhipova, DD Cambuy, FH Coutinho, BE Dutilh Genome biology 20, 1-14, 2019 | 444 | 2019 |
| Marine viruses discovered via metagenomics shed light on viral strategies throughout the oceans FH Coutinho, CB Silveira, GB Gregoracci, CC Thompson, RA Edwards, ... Nature communications 8 (1), 15955, 2017 | 250* | 2017 |
| iPHoP: An integrated machine learning framework to maximize host prediction for metagenome-derived viruses of archaea and bacteria S Roux, AP Camargo, FH Coutinho, SM Dabdoub, BE Dutilh, S Nayfach, ... PLoS biology 21 (4), e3002083, 2023 | 190 | 2023 |
| Environmental and sanitary conditions of Guanabara Bay, Rio de Janeiro GO Fistarol, FH Coutinho, APB Moreira, T Venas, A Cánovas, ... Frontiers in microbiology 6, 1232, 2015 | 183 | 2015 |
| Ecogenomics and taxonomy of Cyanobacteria phylum JM Walter, FH Coutinho, BE Dutilh, J Swings, FL Thompson, ... Frontiers in Microbiology 8, 2132, 2017 | 134 | 2017 |
| Genomes of novel microbial lineages assembled from the sub-ice waters of Lake Baikal PJ Cabello-Yeves, TI Zemskaya, R Rosselli, FH Coutinho, AS Zakharenko, ... Applied and environmental microbiology 84 (1), e02132-17, 2018 | 120 | 2018 |
| RaFAH: Host prediction for viruses of Bacteria and Archaea based on protein content FH Coutinho, A Zaragoza-Solas, M López-Pérez, J Barylski, A Zielezinski, ... Patterns 2 (7), 2021 | 97 | 2021 |
| Thousands of novel endolysins discovered in uncultured phage genomes I Fernández-Ruiz, FH Coutinho, F Rodriguez-Valera Frontiers in microbiology 9, 1033, 2018 | 83 | 2018 |
| Multi-species host range of staphylococcal phages isolated from wastewater PC Göller, T Elsener, D Lorgé, N Radulovic, V Bernardi, A Naumann, ... Nature communications 12 (1), 6965, 2021 | 79 | 2021 |
| Metagenomics sheds light on the ecology of marine microbes and their viruses FH Coutinho, GB Gregoracci, JM Walter, CC Thompson, FL Thompson Trends in microbiology 26 (11), 955-965, 2018 | 79 | 2018 |
| Nasopharyngeal microbial communities of patients infected with SARS-CoV-2 that developed COVID-19 MP Ventero, RRC Cuadrat, I Vidal, BGN Andrade, C Molina-Pardines, ... Frontiers in microbiology 12, 637430, 2021 | 66 | 2021 |
| New viral biogeochemical roles revealed through metagenomic analysis of Lake Baikal FH Coutinho, PJ Cabello-Yeves, R Gonzalez-Serrano, R Rosselli, ... Microbiome 8, 1-15, 2020 | 62 | 2020 |
| Antibiotic resistance is widespread in urban aquatic environments of Rio de Janeiro, Brazil FH Coutinho, CB Silveira, LH Pinto, GRB Salloto, AM Cardoso, ... Microbial ecology 68, 441-452, 2014 | 61 | 2014 |
| Comparative genomics of Synechococcus and proposal of the new genus Parasynechococcus F Coutinho, DA Tschoeke, F Thompson, C Thompson PeerJ 4, e1522, 2016 | 58 | 2016 |
| Diversity and antibiotic resistance profiles of Pseudomonads from a hospital wastewater treatment plant DO Santoro, AM Cardoso, FH Coutinho, LH Pinto, RP Vieira, RM Albano, ... Journal of applied microbiology 119 (6), 1527-1540, 2015 | 52 | 2015 |
| Ecological and genomic features of two widespread freshwater picocyanobacteria PJ Cabello‐Yeves, A Picazo, A Camacho, C Callieri, R Rosselli, ... Environmental Microbiology 20 (10), 3757-3771, 2018 | 48 | 2018 |
| Genomic and ecological attributes of marine bacteriophages encoding bacterial virulence genes CB Silveira, FH Coutinho, GS Cavalcanti, S Benler, MP Doane, ... BMC genomics 21, 1-11, 2020 | 46 | 2020 |
| Niche distribution and influence of environmental parameters in marine microbial communities: a systematic review FH Coutinho, PM Meirelles, APB Moreira, RP Paranhos, BE Dutilh, ... PeerJ 3, e1008, 2015 | 45 | 2015 |
| Insights of phage-host interaction in hypersaline ecosystem through metagenomics analyses AM Motlagh, AS Bhattacharjee, FH Coutinho, BE Dutilh, SR Casjens, ... Frontiers in microbiology 8, 352, 2017 | 41 | 2017 |
Bas E. DutilhMicroverse Cluster, Friedrich Schiller University Jena | Bioinformatics, Utrecht UniversityEmail verificata su uni-jena.de