| MARS: improving multiple circular sequence alignment using refined sequences LAK Ayad, SP Pissis BMC genomics 18, 1-10, 2017 | 53 | 2017 |
| Comparing degenerate strings M Alzamel, LAK Ayad, G Bernardini, R Grossi, CS Iliopoulos, N Pisanti, ... Fundamenta Informaticae 175 (1-4), 41-58, 2020 | 25 | 2020 |
| Degenerate string comparison and applications M Alzamel, G Bernardini, RP Grossi, CS Iliopoulos, NP Pisanti, SP Pissis, ... WABI 2018-18th Workshop on Algorithms in Bioinformatics 113, 1-14, 2018 | 24 | 2018 |
| Longest Common Prefixes with k-Errors and Applications LAK Ayad, C Barton, P Charalampopoulos, CS Iliopoulos, SP Pissis International Symposium on String Processing and Information Retrieval, 27-41, 2018 | 20 | 2018 |
| A faster and more accurate heuristic for cyclic edit distance computation LAK Ayad, C Barton, SP Pissis Pattern Recognition Letters 88, 81-87, 2017 | 20 | 2017 |
| CNEFinder: finding conserved non-coding elements in genomes LAK Ayad, SP Pissis, D Polychronopoulos Bioinformatics 34 (17), i743-i747, 2018 | 14 | 2018 |
| Constructing antidictionaries in output-sensitive space LAK Ayad, G Badkobeh, G Fici, A Héliou, SP Pissis 2019 Data Compression Conference (DCC), 538-547, 2019 | 10 | 2019 |
| Longest Common Prefixes with k-Mismatches and Applications H Alamro, LAK Ayad, P Charalampopoulos, CS Iliopoulos, SP Pissis SOFSEM 2018: Theory and Practice of Computer Science: 44th International …, 2018 | 9 | 2018 |
| libFLASM: a software library for fixed-length approximate string matching LAK Ayad, SP Pissis, A Retha BMC bioinformatics 17, 1-12, 2016 | 8 | 2016 |
| Text indexing for long patterns: Anchors are all you need L Ayad, G Loukidis, S Pissis Proceedings of the VLDB Endowment (PVLDB) 16 (9), 2117, 2023 | 7 | 2023 |
| Longest property-preserved common factor LAK Ayad, G Bernardini, R Grossi, CS Iliopoulos, N Pisanti, SP Pissis, ... International Symposium on String Processing and Information Retrieval, 42-49, 2018 | 5 | 2018 |
| Constructing antidictionaries of long texts in output-sensitive space LAK Ayad, G Badkobeh, G Fici, A Héliou, SP Pissis Theory of Computing Systems 65, 777-797, 2021 | 4 | 2021 |
| Sparse Suffix and LCP Array: Simple, Direct, Small, and Fast LAK Ayad, G Loukides, SP Pissis, H Verbeek Latin American Symposium on Theoretical Informatics, 162-177, 2024 | 3 | 2024 |
| IsoXpressor: a tool to assess transcriptional activity within isochores LAK Ayad, AM Dourou, S Arhondakis, SP Pissis Genome Biology and Evolution 12 (9), 1573-1578, 2020 | 3 | 2020 |
| Creating improvisations on chord progressions using suffix trees LAK Ayad, M Chemillier, SP Pissis Journal of Mathematics and Music 12 (3), 233-247, 2018 | 3 | 2018 |
| Longest property-preserved common factor: A new string-processing framework LAK Ayad, G Bernardini, R Grossi, CS Iliopoulos, N Pisanti, SP Pissis, ... Theoretical Computer Science 812, 244-251, 2020 | 2 | 2020 |
| Seedability: optimizing alignment parameters for sensitive sequence comparison LAK Ayad, R Chikhi, SP Pissis Bioinformatics Advances 3 (1), vbad108, 2023 | 1 | 2023 |
| SMART: SuperMaximal approximate repeats tool LAK Ayad, P Charalampopoulos, SP Pissis Bioinformatics 36 (8), 2589-2591, 2020 | 1 | 2020 |
| Text Indexing for Long Patterns using Locally Consistent Anchors S Pissis, LAK Ayad, G Loukides Cornell University, 2024 | | 2024 |
| Text Indexing for Long Patterns using Locally Consistent Anchors LAK Ayad, G Loukides, SP Pissis arXiv preprint arXiv:2407.11819, 2024 | | 2024 |