| MutaBind2: predicting the impacts of single and multiple mutations on protein-protein interactions N Zhang, Y Chen, H Lu, F Zhao, RV Alvarez, A Goncearenco, ... Iscience 23 (3), 2020 | 154 | 2020 |
| Coupling between histone conformations and DNA geometry in nucleosomes on a microsecond timescale: atomistic insights into nucleosome functions AK Shaytan, GA Armeev, A Goncearenco, VB Zhurkin, D Landsman, ... Journal of molecular biology 428 (1), 221-237, 2016 | 154 | 2016 |
| MutaBind estimates and interprets the effects of sequence variants on protein–protein interactions M Li, FL Simonetti, A Goncearenco, AR Panchenko Nucleic acids research 44 (W1), W494-W501, 2016 | 143 | 2016 |
| A dominant negative heterozygous G87R mutation in the zinc transporter, ZnT-2 (SLC30A2), results in transient neonatal zinc deficiency I Lasry, YA Seo, H Ityel, N Shalva, B Pode-Shakked, F Glaser, B Berman, ... Journal of Biological Chemistry 287 (35), 29348-29361, 2012 | 124 | 2012 |
| APOBEC mutagenesis and copy-number alterations are drivers of proteogenomic tumor evolution and heterogeneity in metastatic thoracic tumors N Roper, S Gao, TK Maity, AR Banday, X Zhang, A Venugopalan, ... Cell reports 26 (10), 2651-2666. e6, 2019 | 106 | 2019 |
| Finding driver mutations in cancer: Elucidating the role of background mutational processes AL Brown, M Li, A Goncearenco, AR Panchenko PLoS computational biology 15 (4), e1006981, 2019 | 98 | 2019 |
| SPACER: server for predicting allosteric communication and effects of regulation A Goncearenco, S Mitternacht, T Yong, B Eisenhaber, F Eisenhaber, ... Nucleic acids research 41 (W1), W266-W272, 2013 | 97 | 2013 |
| Simple yet functional phosphate-loop proteins ML Romero Romero, F Yang, YR Lin, A Toth-Petroczy, IN Berezovsky, ... Proceedings of the National Academy of Sciences 115 (51), E11943-E11950, 2018 | 94 | 2018 |
| From sequence to function through structure: Deep learning for protein design N Ferruz, M Heinzinger, M Akdel, A Goncearenco, L Naef, C Dallago Computational and Structural Biotechnology Journal 21, 238-250, 2023 | 90 | 2023 |
| Exploring background mutational processes to decipher cancer genetic heterogeneity A Goncearenco, SL Rager, M Li, QX Sang, IB Rogozin, AR Panchenko Nucleic acids research 45 (W1), W514-W522, 2017 | 81 | 2017 |
| Thermophilic adaptation of protein complexes inferred from proteomic homology modeling BG Ma, A Goncearenco, IN Berezovsky Structure 18 (7), 819-828, 2010 | 67 | 2010 |
| Protein function from its emergence to diversity in contemporary proteins A Goncearenco, IN Berezovsky Physical biology 12 (4), 045002, 2015 | 62 | 2015 |
| Mutational signatures and mutable motifs in cancer genomes IB Rogozin, YI Pavlov, A Goncearenco, S De, AG Lada, E Poliakov, ... Briefings in bioinformatics 19 (6), 1085-1101, 2018 | 59 | 2018 |
| Exploring protein-protein interactions as drug targets for anti-cancer therapy with in silico workflows A Goncearenco, M Li, FL Simonetti, BA Shoemaker, AR Panchenko Proteomics for Drug Discovery: Methods and Protocols, 221-236, 2017 | 44 | 2017 |
| DNA polymerase η mutational signatures are found in a variety of different types of cancer IB Rogozin, A Goncearenco, AG Lada, S De, V Yurchenko, G Nudelman, ... Cell cycle 17 (3), 348-355, 2018 | 41 | 2018 |
| Prototypes of elementary functional loops unravel evolutionary connections between protein functions A Goncearenco, IN Berezovsky Bioinformatics 26 (18), i497-i503, 2010 | 41 | 2010 |
| Activation induced deaminase mutational signature overlaps with CpG methylation sites in follicular lymphoma and other cancers IB Rogozin, AG Lada, A Goncearenco, MR Green, S De, G Nudelman, ... Scientific reports 6 (1), 38133, 2016 | 40 | 2016 |
| Molecular mechanisms of adaptation emerging from the physics and evolution of nucleic acids and proteins A Goncearenco, BG Ma, IN Berezovsky Nucleic acids research 42 (5), 2879-2892, 2014 | 36 | 2014 |
| MethylToSNP: identifying SNPs in Illumina DNA methylation array data BA LaBarre, A Goncearenco, HM Petrykowska, W Jaratlerdsiri, ... Epigenetics & Chromatin 12, 1-14, 2019 | 33 | 2019 |
| Nucleotide binding database NBDB–a collection of sequence motifs with specific protein-ligand interactions Z Zheng, A Goncearenco, IN Berezovsky Nucleic acids research 44 (D1), D301-D307, 2016 | 30 | 2016 |
Igor N. BerezovskySenior Principal Investigator, Bioinformatics Institute, A*STAR, SingaporeEmail verificata su bii.a-star.edu.sg