עקוב אחר
Paulo Maia
Paulo Maia
SilicoLife SA
כתובת אימייל מאומתת בדומיין silicolife.com
כותרת
צוטט על ידי
צוטט על ידי
שנה
OptFlux: an open-source software platform for in silico metabolic engineering‏
I Rocha, P Maia, P Evangelista, P Vilaça, S Soares, JP Pinto, J Nielsen, ...‏
BMC systems biology 4, 1-12, 2010‏
5042010
MEMOTE for standardized genome-scale metabolic model testing‏
C Lieven, ME Beber, BG Olivier, FT Bergmann, M Ataman, P Babaei, ...‏
Nature biotechnology 38 (3), 272-276, 2020‏
471*2020
In silico constraint-based strain optimization methods: the quest for optimal cell factories‏
P Maia, M Rocha, I Rocha‏
Microbiology and Molecular Biology Reviews 80 (1), 45-67, 2016‏
1442016
Natural computation meta-heuristics for the in silico optimization of microbial strains‏
M Rocha, P Maia, R Mendes, JP Pinto, EC Ferreira, J Nielsen, KR Patil, ...‏
BMC bioinformatics 9, 1-16, 2008‏
1332008
A review of dynamic modeling approaches and their application in computational strain optimization for metabolic engineering‏
OD Kim, M Rocha, P Maia‏
Frontiers in microbiology 9, 1690, 2018‏
1012018
@ Note: a workbench for biomedical text mining‏
A Lourenço, R Carreira, S Carneiro, P Maia, D Glez-Pena, ...‏
Journal of biomedical informatics 42 (4), 710-720, 2009‏
712009
AIBench: a rapid application development framework for translational research in biomedicine‏
D Glez-Peña, M Reboiro-Jato, P Maia, M Rocha, F Díaz, F Fdez-Riverola‏
Computer methods and programs in biomedicine 98 (2), 191-203, 2010‏
562010
Implementing metaheuristic optimization algorithms with jecoli‏
P Evangelista, P Maia, M Rocha‏
2009 Ninth International Conference on Intelligent Systems Design and …, 2009‏
242009
OptGene: a framework for in silico metabolic engineering‏
I Rocha, P Maia, M Rocha, EC Ferreira‏
202008
Evaluating evolutionary multiobjective algorithms for the in silico optimization of mutant strains‏
P Maia, I Rocha, EC Ferreira, M Rocha‏
2008 8th IEEE International Conference on BioInformatics and BioEngineering, 1-6, 2008‏
152008
Comparison of pathway analysis and constraint-based methods for cell factory design‏
V Vieira, P Maia, M Rocha, I Rocha‏
BMC bioinformatics 20, 1-15, 2019‏
122019
CBFA: phenotype prediction integrating metabolic models with constraints derived from experimental data‏
R Carreira, P Evangelista, P Maia, P Vilaça, M Pont, JF Tomb, I Rocha, ...‏
BMC systems biology 8, 1-10, 2014‏
122014
Model‐guided development of an evolutionarily stable yeast chassis‏
F Pereira, H Lopes, P Maia, B Meyer, J Nocon, P Jouhten, ...‏
Molecular systems biology 17 (7), e10253, 2021‏
112021
A platform for the selection of genes in DNA microarraydata using evolutionary algorithms‏
M Rocha, R Mendes, P Maia, D Glez-Peña, F Fdez-Riverola‏
Proceedings of the 9th annual conference on Genetic and evolutionary …, 2007‏
112007
Analyzing and designing cell factories with OptFlux‏
P Vilaça, P Maia, H Giesteira, I Rocha, M Rocha‏
Metabolic Network Reconstruction and Modeling: Methods and Protocols, 37-76, 2018‏
72018
Metaheuristics for strain optimization using transcriptional information enriched metabolic models‏
P Vilaça, P Maia, I Rocha, M Rocha‏
Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics …, 2010‏
72010
An integrated framework for strain optimization‏
P Maia, I Rocha, M Rocha‏
2013 ieee congress on evolutionary computation, 198-205, 2013‏
52013
Identification of robust strain designs via tandem pfba/lmoma phenotype prediction‏
P Maia, I Rocha, M Rocha‏
Proceedings of the Genetic and Evolutionary Computation Conference Companion …, 2017‏
42017
An integrated computational environment for elementary modes analysis of biochemical networks‏
P Maia, P Vilaça, I Rocha, M Pont, JF Tomb, M Rocha‏
International journal of data mining and bioinformatics 6 (4), 382-395, 2012‏
42012
Yeast chassis design for production of dicarboxylic acids‏
F Pereira, H Lopes, P Maia, B Meyer, D Konstantinidis, E Kafkia, P Kötter, ...‏
Elsevier 1, 2018‏
32018
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מאמרים 1–20