| Validating the AMRFinder tool and resistance gene database by using antimicrobial resistance genotype-phenotype correlations in a collection of isolates M Feldgarden, V Brover, DH Haft, AB Prasad, DJ Slotta, I Tolstoy, ... Antimicrobial agents and chemotherapy 63 (11), 10.1128/aac. 00483-19, 2019 | 1146 | 2019 |
| AMRFinderPlus and the Reference Gene Catalog facilitate examination of the genomic links among antimicrobial resistance, stress response, and virulence M Feldgarden, V Brover, N Gonzalez-Escalona, JG Frye, J Haendiges, ... Scientific reports 11 (1), 12728, 2021 | 785* | 2021 |
| Whole-genome sequencing for detecting antimicrobial resistance in nontyphoidal Salmonella PF McDermott, GH Tyson, C Kabera, Y Chen, C Li, JP Folster, SL Ayers, ... Antimicrobial agents and chemotherapy 60 (9), 5515-5520, 2016 | 397 | 2016 |
| Using genomics to track global antimicrobial resistance RS Hendriksen, V Bortolaia, H Tate, GH Tyson, FM Aarestrup, ... Frontiers in public health 7, 242, 2019 | 375 | 2019 |
| Using Machine Learning To Predict Antimicrobial MICs and Associated Genomic Features for Nontyphoidal Salmonella M Nguyen, SW Long, PF McDermott, RJ Olsen, R Olson, RL Stevens, ... Journal of clinical microbiology 57 (2), 10.1128/jcm. 01260-18, 2019 | 280 | 2019 |
| Whole-genome sequencing analysis accurately predicts antimicrobial resistance phenotypes in Campylobacter spp S Zhao, GH Tyson, Y Chen, C Li, S Mukherjee, S Young, C Lam, ... Applied and environmental microbiology 82 (2), 459-466, 2016 | 277 | 2016 |
| WGS accurately predicts antimicrobial resistance in Escherichia coli GH Tyson, PF McDermott, C Li, Y Chen, DA Tadesse, S Mukherjee, ... Journal of Antimicrobial Chemotherapy 70 (10), 2763-2769, 2015 | 273 | 2015 |
| Comparative analysis of extended-spectrum-β-lactamase CTX-M-65-producing Salmonella enterica serovar Infantis isolates from humans, food animals, and retail chickens in the … H Tate, JP Folster, CH Hsu, J Chen, M Hoffmann, C Li, C Morales, ... Antimicrobial Agents and Chemotherapy 61 (7), 10.1128/aac. 00488-17, 2017 | 164 | 2017 |
| The mcr-9 Gene of Salmonella and Escherichia coli Is Not Associated with Colistin Resistance in the United States GH Tyson, C Li, CH Hsu, S Ayers, S Borenstein, S Mukherjee, TT Tran, ... Antimicrobial Agents and Chemotherapy 64 (8), 10.1128/aac. 00573-20, 2020 | 113 | 2020 |
| Prevalence and antimicrobial resistance of enterococci isolated from retail meats in the United States, 2002 to 2014 GH Tyson, E Nyirabahizi, E Crarey, C Kabera, C Lam, C Rice-Trujillo, ... Applied and Environmental Microbiology 84 (1), e01902-17, 2018 | 88 | 2018 |
| A Multidrug-Resistant Salmonella Infantis Clone is Spreading and Recombining in the United States GH Tyson, C Li, LB Harrison, G Martin, CH Hsu, H Tate, TT Tran, E Strain, ... Microbial Drug Resistance 27 (6), 792-799, 2021 | 72 | 2021 |
| Phosphatidylinositol 4, 5-bisphosphate is a novel coactivator of the Pseudomonas aeruginosa cytotoxin ExoU GH Tyson, AR Hauser Infection and immunity 81 (8), 2873-2881, 2013 | 61 | 2013 |
| Structure of the type III secretion effector protein ExoU in complex with its chaperone SpcU AS Halavaty, D Borek, GH Tyson, JL Veesenmeyer, L Shuvalova, ... PloS one 7 (11), e49388, 2012 | 60 | 2012 |
| Whole-genome sequencing based characterization of antimicrobial resistance in Enterococcus GH Tyson, JL Sabo, C Rice-Trujillo, J Hernandez, PF McDermott Pathogens and Disease 76 (2), fty018, 2018 | 56 | 2018 |
| New Delhi metallo-β-lactamase-5–producing Escherichia coli in companion animals, United States SD Cole, L Peak, GH Tyson, R Reimschuessel, O Ceric, SC Rankin Emerging infectious diseases 26 (2), 381, 2020 | 54 | 2020 |
| Diverse Fluoroquinolone Resistance Plasmids From Retail Meat E. coli in the United States GH Tyson, C Li, CH Hsu, S Bodeis-Jones, PF McDermott Frontiers in microbiology 10, 2826, 2019 | 49 | 2019 |
| Identification of plasmid-mediated quinolone resistance in Salmonella isolated from swine ceca and retail pork chops in the United States GH Tyson, HP Tate, S Zhao, C Li, U Dessai, M Simmons, PF McDermott Antimicrobial agents and chemotherapy 61 (10), 10.1128/aac. 01318-17, 2017 | 49 | 2017 |
| Novel linezolid resistance plasmids in Enterococcus from food animals in the USA GH Tyson, JL Sabo, M Hoffmann, CH Hsu, S Mukherjee, J Hernandez, ... Journal of Antimicrobial Chemotherapy 73 (12), 3254-3258, 2018 | 46 | 2018 |
| Future-proofing and maximizing the utility of metadata: The PHA4GE SARS-CoV-2 contextual data specification package EJ Griffiths, RE Timme, CI Mendes, AJ Page, NF Alikhan, D Fornika, ... GigaScience 11, giac003, 2022 | 43* | 2022 |
| Enhancing the one health initiative by using whole genome sequencing to monitor antimicrobial resistance of animal pathogens: Vet-LIRN collaborative project with veterinary … O Ceric, GH Tyson, LB Goodman, PK Mitchell, Y Zhang, M Prarat, J Cui, ... BMC veterinary research 15, 1-13, 2019 | 43 | 2019 |