| Systems-level properties of EGFR-RAS-ERK signaling amplify local signals to generate dynamic gene expression heterogeneity AE Davies, M Pargett, S Siebert, TE Gillies, Y Choi, SJ Tobin, AR Ram, ... Cell systems 11 (2), 161-175. e5, 2020 | 48 | 2020 |
| siVAE: interpretable deep generative models for single-cell transcriptomes Y Choi, R Li, G Quon Genome Biology 24 (1), 29, 2023 | 27 | 2023 |
| Biophysical modeling with variational autoencoders for bimodal, single-cell RNA sequencing data M Carilli, G Gorin, Y Choi, T Chari, L Pachter Nature Methods 21 (8), 1466-1469, 2024 | 19 | 2024 |
| Interpretable deep generative models for genomics Y Choi, R Li, G Quon bioRxiv, 2021.09. 15.460498, 2021 | 6 | 2021 |
| Systems-level properties of EGFR-RAS-ERK signaling amplify local signals to generate dynamic gene expression heterogeneity. Cell Syst. 11, 161–175. e5 AE Davies, M Pargett, S Siebert, TE Gillies, Y Choi, SJ Tobin, AR Ram, ... | 5 | 2020 |
| sciLaMA: A Single-Cell Representation Learning Framework to Leverage Prior Knowledge from Large Language Models H Hu, S Zhang, Y Choi, VS Malladi, G Quon bioRxiv, 2025.01. 28.635153, 2025 | | 2025 |
| Deciphering the History of ERK Activity from Fixed-Cell Immunofluorescence Measurements A Ram, M Pargett, Y Choi, D Murphy, M Cabel, N Kosaisawe, G Quon, ... bioRxiv, 2024 | | 2024 |
