| RNA-seq analysis is easy as 1-2-3 with limma, Glimma and edgeR CW Law, M Alhamdoosh, S Su, X Dong, L Tian, GK Smyth, ME Ritchie F1000Research 5, ISCB Comm J-1408, 2018 | 828 | 2018 |
| Fast decorrelated neural network ensembles with random weights M Alhamdoosh, D Wang Information Sciences 264, 104-117, 2014 | 237 | 2014 |
| Combining multiple tools outperforms individual methods in gene set enrichment analyses M Alhamdoosh, M Ng, NJ Wilson, JM Sheridan, H Huynh, MJ Wilson, ... Bioinformatics 33 (3), 414-424, 2017 | 195 | 2017 |
| Four simple recommendations to encourage best practices in research software RC Jiménez, M Kuzak, M Alhamdoosh, M Barker, B Batut, M Borg, ... F1000Research 6, ELIXIR-876, 2017 | 143 | 2017 |
| Evolutionary extreme learning machine ensembles with size control D Wang, M Alhamdoosh Neurocomputing 102, 98-110, 2013 | 84 | 2013 |
| Easy and efficient ensemble gene set testing with EGSEA M Alhamdoosh, CW Law, L Tian, JM Sheridan, M Ng, ME Ritchie F1000Research 6, 2010, 2017 | 68 | 2017 |
| A guide to creating design matrices for gene expression experiments CW Law, K Zeglinski, X Dong, M Alhamdoosh, GK Smyth, ME Ritchie F1000Research 9, 1444, 2020 | 58 | 2020 |
| Machine learning applied to whole‐blood RNA‐sequencing data uncovers distinct subsets of patients with systemic lupus erythematosus WA Figgett, K Monaghan, M Ng, M Alhamdoosh, E Maraskovsky, ... Clinical & translational immunology 8 (12), e01093, 2019 | 49 | 2019 |
| Improving the prediction of disulfide bonds in Eukaryotes with machine learning methods and protein subcellular localization C Savojardo, P Fariselli, M Alhamdoosh, PL Martelli, A Pierleoni, ... Bioinformatics 27 (16), 2224-2230, 2011 | 46 | 2011 |
| Cellular microenvironment stiffness regulates eicosanoid production and signaling pathways A Berhan, T Harris, J Jaffar, F Jativa, S Langenbach, I Lönnstedt, ... American Journal of Respiratory Cell and Molecular Biology 63 (6), 819-830, 2020 | 29 | 2020 |
| Matrix metalloproteinase-7 is increased in lung bases but not apices in idiopathic pulmonary fibrosis J Jaffar, M Wong, GA Fishbein, M Alhamdoosh, L McMillan, ... ERJ Open Research 8 (4), 2022 | 18 | 2022 |
| Modeling group heteroscedasticity in single-cell RNA-seq pseudo-bulk data Y You, X Dong, YK Wee, MJ Maxwell, M Alhamdoosh, GK Smyth, ... Genome biology 24 (1), 107, 2023 | 15 | 2023 |
| RNA-seq analysis is easy as 1-2-3 with limma, Glimma and edgeR. F1000Res 5: 1408 CW Law, M Alhamdoosh, S Su, GK Smyth, ME Ritchie | 12 | 2016 |
| Topical application of human-derived Ig isotypes for the control of acute respiratory infection evaluated in a human CD89-expressing mouse model S Koernig, IK Campbell, C Mackenzie-Kludas, A Schaub, M Loetscher, ... Mucosal Immunology 12 (4), 1013-1024, 2019 | 11 | 2019 |
| CSL324, a granulocyte colony-stimulating factor receptor antagonist, blocks neutrophil migration markers that are upregulated in hidradenitis suppurativa C Gamell, A Bankovacki, K Scalzo-Inguanti, B Sedgmen, M Alhamdoosh, ... British Journal of Dermatology 188 (5), 636-648, 2023 | 10* | 2023 |
| Blockade of the G-CSF Receptor Is Protective in a Mouse Model of Renal Ischemia–Reperfusion Injury JL McRae, IB Vikstrom, AK Bongoni, EJ Salvaris, N Fisicaro, M Ng, ... The Journal of Immunology 205 (5), 1433-1440, 2020 | 9 | 2020 |
| Four simple recommendations to encourage best practices in research software [version 1; referees: 3 approved]. F1000Res. 2017; 6: pii: ELIXIR-876 RC Jiménez, M Kuzak, M Alhamdoosh PubMed Abstract| Publisher Full Text| Free Full Text, 0 | 9 | |
| Targeting the human βc receptor inhibits contact dermatitis in a transgenic mouse model KH Yip, D McKenzie, HS Ramshaw, J Chao, BJ McClure, E Raquet, ... Journal of Investigative Dermatology 142 (4), 1103-1113. e11, 2022 | 8 | 2022 |
| Anti‐βc mAb CSL311 inhibits human nasal polyp pathophysiology in a humanized mouse xenograft model. KH Yip, NJ Wilson, H Pant, CL Brown, S Busfield, M Ng, M Alhamdoosh, ... Allergy 75 (2), 2020 | 8 | 2020 |
| Modelling the transcription factor DNA-binding affinity using genome-wide ChIP-based data M Alhamdoosh, D Wang bioRxiv, 061978, 2016 | 7 | 2016 |
Matthew E RitchieThe Walter and Eliza Hall Institute of Medical Researchכתובת אימייל מאומתת בדומיין wehi.edu.au