| MOLE 2.0: advanced approach for analysis of biomacromolecular channels D Sehnal, R Svobodová Vařeková, K Berka, L Pravda, V Navrátilová, ... Journal of cheminformatics 5, 1-13, 2013 | 341 | 2013 |
| MOLEonline: a web-based tool for analyzing channels, tunnels and pores (2018 update) L Pravda, D Sehnal, D Toušek, V Navrátilová, V Bazgier, K Berka, ... Nucleic acids research 46 (W1), W368-W373, 2018 | 293 | 2018 |
| Membrane-attached mammalian cytochromes P450: An overview of the membrane's effects on structure, drug binding, and interactions with redox partners M Šrejber, V Navrátilová, M Paloncýová, V Bazgier, K Berka, ... Journal of inorganic biochemistry 183, 117-136, 2018 | 196 | 2018 |
| MOLEonline 2.0: interactive web-based analysis of biomacromolecular channels K Berka, O Hanák, D Sehnal, P Banáš, V Navratilova, D Jaiswal, ... Nucleic acids research 40 (W1), W222-W227, 2012 | 156 | 2012 |
| Dynamics and hydration of the active sites of mammalian cytochromes P450 probed by molecular dynamics simulations T Hendrychova, K Berka, V Navratilova, P Anzenbacher, M Otyepka Current drug metabolism 13 (2), 177-189, 2012 | 64 | 2012 |
| Role of enzyme flexibility in ligand access and egress to active site: bias-exchange metadynamics study of 1, 3, 7-trimethyluric acid in cytochrome P450 3A4 M Paloncýová, V Navrátilová, K Berka, A Laio, M Otyepka Journal of Chemical Theory and Computation 12 (4), 2101-2109, 2016 | 57 | 2016 |
| The role of protein-protein and protein-membrane interactions on P450 function EE Scott, CR Wolf, M Otyepka, SC Humphreys, JR Reed, CJ Henderson, ... Drug metabolism and disposition 44 (4), 576-590, 2016 | 54 | 2016 |
| Effect of cholesterol on the structure of membrane-attached cytochrome P450 3A4 V Navrátilová, M Paloncýová, M Kajšová, K Berka, M Otyepka Journal of Chemical Information and Modeling 55 (3), 628-635, 2015 | 40 | 2015 |
| ChannelsDB: database of biomacromolecular tunnels and pores L Pravda, D Sehnal, R Svobodová Vařeková, V Navrátilová, D Toušek, ... Nucleic Acids Research 46 (D1), D399-D405, 2018 | 39 | 2018 |
| Effect of lipid charge on membrane immersion of cytochrome P450 3A4 V Navrátilová, M Paloncýová, K Berka, M Otyepka The Journal of Physical Chemistry B 120 (43), 11205-11213, 2016 | 33 | 2016 |
| Uncovering of cytochrome P450 anatomy by SecStrAnnotator A Midlik, V Navrátilová, TR Moturu, J Koča, R Svobodová, K Berka Scientific Reports 11 (1), 12345, 2021 | 15 | 2021 |
| Molecular insights into the role of a distal F240A mutation that alters CYP1A1 activity towards persistent organic pollutants V Navrátilová, M Paloncýová, K Berka, S Mise, Y Haga, C Matsumura, ... Biochimica et Biophysica Acta (BBA)-General Subjects 1861 (11), 2852-2860, 2017 | 15 | 2017 |
| Automated family-wide annotation of secondary structure elements A Midlik, I Hutařová Vařeková, J Hutař, TR Moturu, V Navrátilová, J Koča, ... Protein Supersecondary Structures: Methods and Protocols, 47-71, 2019 | 6 | 2019 |
| Secondary Structure Elements-Annotations and Schematic 2D Visualizations Stable for Individual Protein Families RS Varekova, A Midlik, IH Varekova, J Hutar, V Navratilova, J Koca, ... Biophysical Journal 114 (3), 46a-47a, 2018 | 2 | 2018 |
| Channelsdb and moleonline-database and tool for analysis of biomacromolecular tunnels and pores L Pravda, D Sehnal, K Berka, V Navrátilová, D Toušěk, V Bazgier, ... Biophysical Journal 114 (3), 342a-343a, 2018 | 1 | 2018 |
| Secondary Structure Elements-Annotations and Schematic 2D Visualizations Stable for Individual Protein Families R Svobodová, A Midlik, I Hutařová Vařeková, J Hutař, V Navrátilová, ... | | 2018 |
| Annotation of protein secondary structure elements for whole protein families A Midlik, I Hutařová Vařeková, J Hutař, V Navrátilová, R Svobodová, ... | | 2018 |
| Cytochrome P450 Oxidoreductase Simulations: Cofactors Movement and Structural Changes M Srejber, V Navratilova, M Otyepka, K Berka Protein Science 24, 166-167, 2015 | | 2015 |
| Effect of Membrane Composition on the Structure of Membrane-Attached Cytochrome P450 3A4 V Navratilova, M Paloncyova, M Kajsova, K Berka, M Otyepka Protein Science 24, 162-163, 2015 | | 2015 |
| Hlasy z archivů: Písně generované AI na základě již nežijících umělců V NAVRÁTILOVÁ | | |
Karel BerkaPalacký University Olomoucכתובת אימייל מאומתת בדומיין upol.cz
