עקוב אחר
Ali Masoudi-Nejad, Professor
Ali Masoudi-Nejad, Professor
Laboratory of Systems Biology and Bioinformatics (LBB), University of Tehran
כתובת אימייל מאומתת בדומיין ut.ac.ir - דף הבית
כותרת
צוטט על ידי
צוטט על ידי
שנה
Kavosh: a new algorithm for finding network motifs‏
ZRM Kashani, H Ahrabian, E Elahi, A Nowzari-Dalini, ES Ansari, S Asadi, ...‏
BMC bioinformatics 10, 1-12, 2009‏
2972009
Predictive genomics: a cancer hallmark network framework for predicting tumor clinical phenotypes using genome sequencing data‏
E Wang, N Zaman, S Mcgee, JS Milanese, A Masoudi-Nejad, ...‏
Seminars in cancer biology 30, 4-12, 2015‏
2432015
DeepCDA: deep cross-domain compound–protein affinity prediction through LSTM and convolutional neural networks‏
K Abbasi, P Razzaghi, A Poso, M Amanlou, JB Ghasemi, ...‏
Bioinformatics 36 (17), 4633-4642, 2020‏
2222020
EGassembler: online bioinformatics service for large-scale processing, clustering and assembling ESTs and genomic DNA fragments‏
A Masoudi-Nejad, K Tonomura, S Kawashima, Y Moriya, M Suzuki, M Itoh, ...‏
Nucleic acids research 34 (suppl_2), W459-W462, 2006‏
2172006
Reconstruction of an integrated genome-scale co-expression network reveals key modules involved in lung adenocarcinoma‏
G Bidkhori, Z Narimani, S Hosseini Ashtiani, A Moeini, A Nowzari-Dalini, ...‏
PloS one 8 (7), e67552, 2013‏
1892013
MODA: an efficient algorithm for network motif discovery in biological networks‏
S Omidi, F Schreiber, A Masoudi-Nejad‏
Genes & genetic systems 84 (5), 385-395, 2009‏
1842009
Computational prediction of protein–protein interaction networks: algorithms and resources‏
J Zahiri, J Hannon Bozorgmehr, A Masoudi-Nejad‏
Current genomics 14 (6), 397-414, 2013‏
1652013
PPIevo: Protein–protein interaction prediction from PSSM based evolutionary information‏
J Zahiri, O Yaghoubi, M Mohammad-Noori, R Ebrahimpour, ...‏
Genomics 102 (4), 237-242, 2013‏
1642013
FeatureSelect: a software for feature selection based on machine learning approaches‏
Y Masoudi-Sobhanzadeh, H Motieghader, A Masoudi-Nejad‏
BMC bioinformatics 20, 1-17, 2019‏
1282019
A hybrid gene selection algorithm for microarray cancer classification using genetic algorithm and learning automata‏
H Motieghader, A Najafi, B Sadeghi, A Masoudi-Nejad‏
Informatics in Medicine Unlocked 9, 246-254, 2017‏
1272017
Alterations in cancer cell metabolism: the Warburg effect and metabolic adaptation‏
Y Asgari, Z Zabihinpour, A Salehzadeh-Yazdi, F Schreiber, ...‏
Genomics 105 (5-6), 275-281, 2015‏
1222015
Drug databases and their contributions to drug repurposing‏
Y Masoudi-Sobhanzadeh, Y Omidi, M Amanlou, A Masoudi-Nejad‏
Genomics 112 (2), 1087-1095, 2020‏
1182020
Drug–target interaction prediction via chemogenomic space: learning-based methods‏
Z Mousavian, A Masoudi-Nejad‏
Expert opinion on drug metabolism & toxicology 10 (9), 1273-1287, 2014‏
1142014
Deep learning in drug target interaction prediction: current and future perspectives‏
K Abbasi, P Razzaghi, A Poso, S Ghanbari-Ara, A Masoudi-Nejad‏
Current Medicinal Chemistry 28 (11), 2100-2113, 2021‏
1012021
Drug–target interaction prediction from PSSM based evolutionary information‏
Z Mousavian, S Khakabimamaghani, K Kavousi, A Masoudi-Nejad‏
Journal of pharmacological and toxicological methods 78, 42-51, 2016‏
972016
Building blocks of biological networks: a review on major network motif discovery algorithms‏
A Masoudi-Nejad, F Schreiber, ZRM Kashani‏
IET systems biology 6 (5), 164-174, 2012‏
962012
Drug-target and disease networks: polypharmacology in the post-genomic era‏
A Masoudi-Nejad, Z Mousavian, JH Bozorgmehr‏
In silico pharmacology 1, 1-4, 2013‏
852013
A multimodal deep learning-based drug repurposing approach for treatment of COVID-19‏
SA Hooshmand, M Zarei Ghobadi, SE Hooshmand, ...‏
Molecular diversity 25, 1717-1730, 2021‏
752021
Controllability in cancer metabolic networks according to drug targets as driver nodes‏
Y Asgari, A Salehzadeh-Yazdi, F Schreiber, A Masoudi-Nejad‏
PloS one 8 (11), e79397, 2013‏
742013
Emerging roles of epigenetic mechanisms in Parkinson’s disease‏
E Habibi, A Masoudi-Nejad, HM Abdolmaleky, SJ Haggarty‏
Functional & integrative genomics 11, 523-537, 2011‏
682011
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מאמרים 1–20