| Critical assessment of metagenome interpretation—a benchmark of metagenomics software A Sczyrba, P Hofmann, P Belmann, D Koslicki, S Janssen, J Dröge, ... Nature methods 14 (11), 1063-1071, 2017 | 820 | 2017 |
| Space-efficient and exact de Bruijn graph representation based on a Bloom filter R Chikhi, G Rizk Algorithms for Molecular Biology 8, 1-9, 2013 | 424 | 2013 |
| FEELnc: a tool for long non-coding RNA annotation and its application to the dog transcriptome V Wucher, F Legeai, B Hédan, G Rizk, L Lagoutte, T Leeb, V Jagannathan, ... Nucleic acids research 45 (8), e57-e57, 2017 | 422 | 2017 |
| DSK: k-mer counting with very low memory usage G Rizk, D Lavenier, R Chikhi Bioinformatics 29 (5), 652-653, 2013 | 390 | 2013 |
| GASSST: global alignment short sequence search tool G Rizk, D Lavenier Bioinformatics 26 (20), 2534-2540, 2010 | 130 | 2010 |
| Space-efficient and exact de Bruijn graph representation based on a Bloom filter R Chikhi, G Rizk Algorithms in Bioinformatics: 12th International Workshop, WABI 2012 …, 2012 | 125 | 2012 |
| Finding maximum cliques on a quantum annealer G Chapuis, H Djidjev, G Hahn, G Rizk Proceedings of the Computing Frontiers Conference, 63-70, 2017 | 124 | 2017 |
| Reference-free detection of isolated SNPs R Uricaru, G Rizk, V Lacroix, E Quillery, O Plantard, R Chikhi, C Lemaitre, ... Nucleic acids research 43 (2), e11-e11, 2015 | 123 | 2015 |
| Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum F Legeai, G Rizk, T Walsh, O Edwards, K Gordon, D Lavenier, N Leterme, ... BMC genomics 11, 1-9, 2010 | 117 | 2010 |
| Reference-free compression of high throughput sequencing data with a probabilistic de Bruijn graph G Benoit, C Lemaitre, D Lavenier, E Drezen, T Dayris, R Uricaru, G Rizk BMC bioinformatics 16, 1-14, 2015 | 112 | 2015 |
| Fast and scalable minimal perfect hashing for massive key sets A Limasset, G Rizk, R Chikhi, P Peterlongo arXiv preprint arXiv:1702.03154, 2017 | 108 | 2017 |
| GATB: genome assembly & analysis tool box E Drezen, G Rizk, R Chikhi, C Deltel, C Lemaitre, P Peterlongo, ... Bioinformatics 30 (20), 2959-2961, 2014 | 98 | 2014 |
| MindTheGap: integrated detection and assembly of short and long insertions G Rizk, A Gouin, R Chikhi, C Lemaitre Bioinformatics 30 (24), 3451-3457, 2014 | 66 | 2014 |
| GPU accelerated RNA folding algorithm G Rizk, D Lavenier Computational Science–ICCS 2009: 9th International Conference Baton Rouge …, 2009 | 63 | 2009 |
| Efficient combinatorial optimization using quantum annealing HN Djidjev, G Chapuis, G Hahn, G Rizk arXiv preprint arXiv:1801.08653, 2018 | 50 | 2018 |
| Bloocoo, a memory efficient read corrector G Benoit, D Lavenier, C Lemaitre, G Rizk European conference on computational biology (ECCB), 2014 | 21 | 2014 |
| Efficient and quality-optimized metagenomic pipeline designed for taxonomic classification in routine microbiological clinical tests S Buffet-Bataillon, G Rizk, V Cattoir, M Sassi, V Thibault, J Del Giudice, ... Microorganisms 10 (4), 711, 2022 | 13 | 2022 |
| GPU accelerated RNA folding algorithm G Rizk, D Lavenier, S Rajopadhye GPU Computing Gems Emerald Edition, 199-210, 2011 | 9 | 2011 |
| Benchmark data sets, software results and reference data for the first CAMI challenge A Sczyrba, P Hofman, P Belmann, D Koslicki, S Janssen, J Dröge, ... GigaScience Database, 2017 | 6 | 2017 |
| Compression of high throughput sequencing data with probabilistic de Bruijn graph G Benoit, C Lemaitre, D Lavenier, G Rizk arXiv preprint arXiv:1412.5932, 2014 | 5 | 2014 |
