| PDBsum: Structural summaries of PDB entries RA Laskowski, J Jabłońska, L Pravda, RS Vařeková, JM Thornton Protein science 27 (1), 129-134, 2018 | 1363 | 2018 |
| Protein Data Bank: the single global archive for 3D macromolecular structure data Nucleic acids research 47 (D1), D520-D528, 2019 | 780 | 2019 |
| MOLE 2.0: advanced approach for analysis of biomacromolecular channels D Sehnal, R Svobodová Vařeková, K Berka, L Pravda, V Navrátilová, ... Journal of cheminformatics 5, 1-13, 2013 | 341 | 2013 |
| MOLEonline: a web-based tool for analyzing channels, tunnels and pores (2018 update) L Pravda, D Sehnal, D Toušek, V Navrátilová, V Bazgier, K Berka, ... Nucleic acids research 46 (W1), W368-W373, 2018 | 293 | 2018 |
| PDBe: improved findability of macromolecular structure data in the PDB DR Armstrong, JM Berrisford, MJ Conroy, A Gutmanas, S Anyango, ... Nucleic acids research 48 (D1), D335-D343, 2020 | 194 | 2020 |
| LiteMol suite: interactive web-based visualization of large-scale macromolecular structure data D Sehnal, M Deshpande, RS Vařeková, S Mir, K Berka, A Midlik, L Pravda, ... Nature Methods 14 (12), 1121-1122, 2017 | 141 | 2017 |
| Anatomy of enzyme channels L Pravda, K Berka, R Svobodová Vařeková, D Sehnal, P Banáš, ... BMC bioinformatics 15, 1-8, 2014 | 141 | 2014 |
| PDBe-KB: a community-driven resource for structural and functional annotations M Varadi, J Berrisford, M Deshpande, SS Nair, A Gutmanas, D Armstrong, ... Nucleic Acids Research 48 (D1), D344-D353, 2020 | 86 | 2020 |
| AtomicChargeCalculator: interactive web-based calculation of atomic charges in large biomolecular complexes and drug-like molecules CM Ionescu, D Sehnal, FL Falginella, P Pant, L Pravda, T Bouchal, ... Journal of cheminformatics 7, 1-13, 2015 | 72 | 2015 |
| PDBe-KB: collaboratively defining the biological context of structural data Nucleic acids research 50 (D1), D534-D542, 2022 | 44 | 2022 |
| ChannelsDB: database of biomacromolecular tunnels and pores L Pravda, D Sehnal, R Svobodová Vařeková, V Navrátilová, D Toušek, ... Nucleic Acids Research 46 (D1), D399-D405, 2018 | 39 | 2018 |
| ValidatorDB: database of up-to-date validation results for ligands and non-standard residues from the Protein Data Bank D Sehnal, R Svobodová Vařeková, L Pravda, CM Ionescu, S Geidl, ... Nucleic acids research 43 (D1), D369-D375, 2015 | 38 | 2015 |
| PatternQuery: web application for fast detection of biomacromolecular structural patterns in the entire Protein Data Bank D Sehnal, L Pravda, R Svobodová Vařeková, CM Ionescu, J Koča Nucleic acids research 43 (W1), W383-W388, 2015 | 28 | 2015 |
| PDBe and PDBe‐KB: Providing high‐quality, up‐to‐date and integrated resources of macromolecular structures to support basic and applied research and education M Varadi, S Anyango, SD Appasamy, D Armstrong, M Bage, J Berrisford, ... Protein Science 31 (10), e4439, 2022 | 26 | 2022 |
| Finding enzyme cofactors in protein data bank A Mukhopadhyay, N Borkakoti, L Pravda, JD Tyzack, JM Thornton, ... Bioinformatics 35 (18), 3510-3511, 2019 | 25 | 2019 |
| MotiveValidator: interactive web-based validation of ligand and residue structure in biomolecular complexes RS Vařeková, D Jaiswal, D Sehnal, CM Ionescu, S Geidl, L Pravda, ... Nucleic acids research 42 (W1), W227-W233, 2014 | 20 | 2014 |
| The diversity of yellow-related proteins in sand flies (Diptera: Psychodidae) M Sima, M Novotny, L Pravda, P Sumova, I Rohousova, P Volf PLoS One 11 (11), e0166191, 2016 | 19 | 2016 |
| PDBe aggregated API: programmatic access to an integrative knowledge graph of molecular structure data S Nair, M Váradi, N Nadzirin, L Pravda, S Anyango, S Mir, J Berrisford, ... Bioinformatics 37 (21), 3950-3952, 2021 | 15 | 2021 |
| Coenzyme-protein interactions since early life AC Sanchez-Rocha, M Makarov, L Pravda, M Novotný, K Hlouchová bioRxiv, 2023.10. 28.563965, 2023 | 8 | 2023 |
| PDBe CCDUtils: an RDKit-based toolkit for handling and analysing small molecules in the Protein Data Bank IR Kunnakkattu, P Choudhary, L Pravda, N Nadzirin, OS Smart, Q Yuan, ... Journal of Cheminformatics 15 (1), 117, 2023 | 6 | 2023 |
David SehnalMasaryk Universityכתובת אימייל מאומתת בדומיין mail.muni.cz