| DMAP: a connectivity map database to enable identification of novel drug repositioning candidates H Huang, T Nguyen, S Ibrahim, S Shantharam, Z Yue, JY Chen BMC bioinformatics 16, 1-11, 2015 | 72 | 2015 |
| Proteomic characterization reveals that MMP-3 correlates with bronchiolitis obliterans syndrome following allogeneic hematopoietic cell and lung transplantation X Liu, Z Yue, J Yu, E Daguindau, K Kushekhar, Q Zhang, Y Ogata, ... American Journal of Transplantation 16 (8), 2342-2351, 2016 | 40 | 2016 |
| Metabolic alterations mediated by STAT3 promotes drug persistence in CML SB Patel, T Nemkov, D Stefanoni, GA Benavides, MA Bassal, BL Crown, ... Leukemia 35 (12), 3371-3382, 2021 | 37 | 2021 |
| Repositioning drugs by targeting network modules: a Parkinson’s disease case study Z Yue, I Arora, EY Zhang, V Laufer, SL Bridges, JY Chen BMC bioinformatics 18, 17-30, 2017 | 36 | 2017 |
| A nonredundant role for T cell-derived interleukin 22 in antibacterial defense of colonic crypts CL Zindl, SJ Witte, VA Laufer, M Gao, Z Yue, KM Janowski, B Cai, BF Frey, ... Immunity 55 (3), 494-511. e11, 2022 | 32 | 2022 |
| PAGER: constructing PAGs and new PAG–PAG relationships for network biology Z Yue, MM Kshirsagar, T Nguyen, C Suphavilai, MT Neylon, L Zhu, ... Bioinformatics 31 (12), i250-i257, 2015 | 30 | 2015 |
| PAGER 2.0: an update to the pathway, annotated-list and gene-signature electronic repository for Human Network Biology Z Yue, Q Zheng, MT Neylon, M Yoo, J Shin, Z Zhao, AC Tan, JY Chen Nucleic acids research 46 (D1), D668-D676, 2018 | 22 | 2018 |
| An in vivo model of glioblastoma radiation resistance identifies long noncoding RNAs and targetable kinases CT Stackhouse, JC Anderson, Z Yue, T Nguyen, NJ Eustace, CP Langford, ... JCI insight 7 (16), e148717, 2022 | 14 | 2022 |
| PAGER-CoV: a comprehensive collection of pathways, annotated gene-lists and gene signatures for coronavirus disease studies Z Yue, E Zhang, C Xu, S Khurana, N Batra, SDH Dang, JJ Cimino, ... Nucleic acids research 49 (D1), D589-D599, 2021 | 12 | 2021 |
| Tumor-associated macrophage targeting of nanomedicines in cancer therapy X Kang, Y Huang, H Wang, S Jadhav, Z Yue, AK Tiwari, RJ Babu Pharmaceutics 16 (1), 61, 2023 | 10 | 2023 |
| PAGER Web APP: An interactive, online gene set and network interpretation tool for functional genomics Z Yue, R Slominski, S Bharti, JY Chen Frontiers in Genetics, 744, 2022 | 10 | 2022 |
| BEERE: a web server for biomedical entity expansion, ranking and explorations Z Yue, CD Willey, AB Hjelmeland, JY Chen Nucleic Acids Research 47 (W1), W578-W586, 2019 | 10 | 2019 |
| Mechanisms of radiation resistance in Deinococcus radiodurans R1 revealed by the reconstruction of gene regulatory network using bayesian network approach P Wan, Z Yue, Z Xie, Q Gao, M Yu, Z Yang, J Huang J Proteomics Bioinform S 6, 2, 2013 | 10 | 2013 |
| WIPER: Weighted in‐Path Edge Ranking for biomolecular association networks Z Yue, T Nguyen, E Zhang, J Zhang, JY Chen Quantitative Biology 7 (4), 313-326, 2019 | 6 | 2019 |
| WINNER: A network biology tool for biomolecular characterization and prioritization T Nguyen, Z Yue, R Slominski, R Welner, J Zhang, JY Chen Frontiers in big Data 5, 1016606, 2022 | 5 | 2022 |
| “Super Gene Set” Causal Relationship Discovery from Functional Genomics Data Z Yue, MT Neylon, T Nguyen, T Ratliff, JY Chen IEEE/ACM transactions on computational biology and bioinformatics 15 (6 …, 2018 | 4 | 2018 |
| SLDR: a computational technique to identify novel genetic regulatory relationships Z Yue, P Wan, H Huang, Z Xie, JY Chen BMC bioinformatics 15, 1-16, 2014 | 4 | 2014 |
| The association between polypharmacy and health-related quality of life among older adults with prostate cancer Z Yue, X Xue, J Qian Journal of Geriatric Oncology 15 (5), 101772, 2024 | 3 | 2024 |
| Statistical enrichment analysis of samples: A general-purpose tool to annotate metadata neighborhoods of biological samples TM Nguyen, S Bharti, Z Yue, CD Willey, JY Chen Frontiers in big Data 4, 725276, 2021 | 3 | 2021 |
| Nanotechnology in Advancing Chimeric Antigen Receptor T Cell Therapy for Cancer Treatment X Kang, N Mita, L Zhou, S Wu, Z Yue, RJ Babu, P Chen Pharmaceutics 16 (9), 1228, 2024 | 2 | 2024 |
Jake Y. Chen, PhD, FACMI, FAIMBEUniversity of Alabama at Birmingham (UAB) School of Medicineכתובת אימייל מאומתת בדומיין uab.edu