| HiGlass: web-based visual exploration and analysis of genome interaction maps P Kerpedjiev, N Abdennur, F Lekschas, C McCallum, K Dinkla, H Strobelt, ... Genome biology 19, 1-12, 2018 | 1897 | 2018 |
| Sustainable data analysis with Snakemake F Mölder, KP Jablonski, B Letcher, MB Hall, CH Tomkins-Tinch, V Sochat, ... F1000Research 10, 2021 | 1166 | 2021 |
| Endogenous siRNAs derived from transposons and mRNAs in Drosophila somatic cells M Ghildiyal, H Seitz, MD Horwich, C Li, T Du, S Lee, J Xu, ELW Kittler, ... Science 320 (5879), 1077-1081, 2008 | 829 | 2008 |
| Global mapping of translation initiation sites in mammalian cells at single-nucleotide resolution S Lee, B Liu, S Lee, SX Huang, B Shen, SB Qian Proceedings of the National Academy of Sciences 109 (37), E2424-E2432, 2012 | 704 | 2012 |
| Somatic mutation in single human neurons tracks developmental and transcriptional history MA Lodato, MB Woodworth, S Lee, GD Evrony, BK Mehta, A Karger, ... Science 350 (6256), 94-98, 2015 | 607 | 2015 |
| Collapse of germline piRNAs in the absence of Argonaute3 reveals somatic piRNAs in flies C Li, VV Vagin, S Lee, J Xu, S Ma, H Xi, H Seitz, MD Horwich, M Syrzycka, ... Cell 137 (3), 509-521, 2009 | 605 | 2009 |
| Hallmarks of pluripotency A De Los Angeles, F Ferrari, R Xi, Y Fujiwara, N Benvenisty, H Deng, ... Nature 525 (7570), 469-478, 2015 | 516 | 2015 |
| The Drosophila HP1 homolog Rhino is required for transposon silencing and piRNA production by dual-strand clusters C Klattenhoff, H Xi, C Li, S Lee, J Xu, JS Khurana, F Zhang, N Schultz, ... Cell 138 (6), 1137-1149, 2009 | 483 | 2009 |
| Comparative analysis of metazoan chromatin organization JWK Ho, YL Jung, T Liu, BH Alver, S Lee, K Ikegami, KA Sohn, A Minoda, ... Nature 512 (7515), 449-452, 2014 | 431 | 2014 |
| A comparison of genetically matched cell lines reveals the equivalence of human iPSCs and ESCs J Choi, S Lee, W Mallard, K Clement, GM Tagliazucchi, H Lim, IY Choi, ... Nature biotechnology 33 (11), 1173-1181, 2015 | 317 | 2015 |
| Linking transcriptional and genetic tumor heterogeneity through allele analysis of single-cell RNA-seq data J Fan, HO Lee, S Lee, D Ryu, S Lee, C Xue, SJ Kim, K Kim, N Barkas, ... Genome research 28 (8), 1217-1227, 2018 | 237 | 2018 |
| Accurate quantification of transcriptome from RNA-Seq data by effective length normalization S Lee, CH Seo, B Lim, JO Yang, J Oh, M Kim, S Lee, B Lee, C Kang, ... Nucleic Acids Research 39 (2), e9-e9, 2011 | 131 | 2011 |
| NGSCheckMate: software for validating sample identity in next-generation sequencing studies within and across data types S Lee, S Lee, S Ouellette, WY Park, EA Lee, PJ Park Nucleic acids research 45 (11), e103-e103, 2017 | 125 | 2017 |
| The 4D Nucleome Data Portal as a resource for searching and visualizing curated nucleomics data SB Reiff, AJ Schroeder, K Kırlı, A Cosolo, C Bakker, L Mercado, S Lee, ... Nature communications 13 (1), 2365, 2022 | 122 | 2022 |
| Comprehensive identification of transposable element insertions using multiple sequencing technologies C Chu, R Borges-Monroy, VV Viswanadham, S Lee, H Li, EA Lee, PJ Park Nature communications 12 (1), 3836, 2021 | 91 | 2021 |
| DUSP9 Modulates DNA Hypomethylation in Female Mouse Pluripotent Stem Cells J Choi, K Clement, AJ Huebner, J Webster, CM Rose, J Brumbaugh, ... Cell Stem Cell 20 (5), 706-719. e7, 2017 | 84 | 2017 |
| HiNT: a computational method for detecting copy number variations and translocations from Hi-C data S Wang, S Lee, C Chu, D Jain, P Kerpedjiev, GM Nelson, JM Walsh, ... Genome biology 21, 1-15, 2020 | 78 | 2020 |
| Relative codon adaptation index, a sensitive measure of codon usage bias S Lee, S Weon, S Lee, C Kang Evolutionary Bioinformatics 6, 47, 2010 | 72 | 2010 |
| Failure to replicate the STAP cell phenomenon A De Los Angeles, F Ferrari, Y Fujiwara, R Mathieu, S Lee, S Lee, HC Tu, ... Nature 525 (7570), E6-E9, 2015 | 48 | 2015 |
| Quantitative analysis of single nucleotide polymorphisms within copy number variation S Lee, S Kasif, Z Weng, CR Cantor PLoS One 3 (12), e3906, 2008 | 46 | 2008 |
