| 101 Dothideomycetes genomes: a test case for predicting lifestyles and emergence of pathogens S Haridas, R Albert, M Binder, J Bloem, K LaButti, A Salamov, ... Studies in mycology 96 (1), 141-153, 2020 | 216 | 2020 |
| Transposable Elements versus the Fungal Genome: Impact on Whole-Genome Architecture and Transcriptional Profiles R Castanera, L López-Varas, A Borgognone, K LaButti, A Lapidus, ... PLoS genetics 12 (6), e1006108, 2016 | 202 | 2016 |
| Transposons played a major role in the diversification between the closely related almond and peach genomes: results from the almond genome sequence T Alioto, KG Alexiou, A Bardil, F Barteri, R Castanera, F Cruz, A Dhingra, ... The Plant Journal 101 (2), 455-472, 2020 | 129 | 2020 |
| Transcriptional and enzymatic profiling of Pleurotus ostreatus laccase genes in submerged and solid-state fermentation cultures R Castanera, G Pérez, A Omarini, M Alfaro, AG Pisabarro, V Faraco, ... Applied and environmental microbiology 78 (11), 4037-4045, 2012 | 118 | 2012 |
| Ligninolytic peroxidase gene expression by Pleurotus ostreatus: differential regulation in lignocellulose medium and effect of temperature and pH E Fernández-Fueyo, R Castanera, FJ Ruiz-Dueñas, MF López-Lucendo, ... Fungal Genetics and Biology 72, 150-161, 2014 | 110 | 2014 |
| Genomic analysis enlightens Agaricales lifestyle evolution and increasing peroxidase diversity FJ Ruiz-Dueñas, JM Barrasa, M Sánchez-García, S Camarero, ... Molecular biology and evolution 38 (4), 1428-1446, 2021 | 98 | 2021 |
| Induction of laccase activity in the white rot fungus Pleurotus ostreatus using water polluted with wheat straw extracts A Parenti, E Muguerza, AR Iroz, A Omarini, E Conde, M Alfaro, ... Bioresource Technology 133, 142-149, 2013 | 90 | 2013 |
| Comparative and transcriptional analysis of the predicted secretome in the lignocellulose‐degrading basidiomycete fungus Pleurotus ostreatus M Alfaro, R Castanera, JL Lavín, IV Grigoriev, JA Oguiza, L Ramírez, ... Environmental microbiology 18 (12), 4710-4726, 2016 | 86 | 2016 |
| An improved melon reference genome with single-molecule sequencing uncovers a recent burst of transposable elements with potential impact on genes R Castanera, V Ruggieri, M Pujol, J Garcia-Mas, JM Casacuberta Frontiers in Plant Science 10, 1815, 2020 | 82 | 2020 |
| A benchmark of transposon insertion detection tools using real data P Vendrell-Mir, F Barteri, M Merenciano, J González, JM Casacuberta, ... Mobile DNA 10, 1-19, 2019 | 56 | 2019 |
| Genome-wide survey of repetitive DNA elements in the button mushroom Agaricus bisporus M Foulongne-Oriol, C Murat, R Castanera, L Ramírez, ASM Sonnenberg Fungal Genetics and Biology 55, 6-21, 2013 | 46 | 2013 |
| Biology, dynamics, and applications of transposable elements in basidiomycete fungi R Castanera, A Borgognone, AG Pisabarro, L Ramírez Applied microbiology and biotechnology 101 (4), 1337-1350, 2017 | 41 | 2017 |
| Validation of reference genes for transcriptional analyses in Pleurotus ostreatus by using reverse transcription-quantitative PCR R Castanera, L López-Varas, AG Pisabarro, L Ramírez Applied and environmental microbiology 81 (12), 4120-4129, 2015 | 41 | 2015 |
| Amplification dynamics of miniature inverted‐repeat transposable elements and their impact on rice trait variability R Castanera, P Vendrell‐Mir, A Bardil, MC Carpentier, O Panaud, ... The Plant Journal 107 (1), 118-135, 2021 | 30 | 2021 |
| Highly expressed captured genes and cross-kingdom domains present in Helitrons create novel diversity in Pleurotus ostreatus and other fungi R Castanera, G Pérez, L López, R Sancho, F Santoyo, M Alfaro, ... BMC genomics 15, 1-17, 2014 | 26 | 2014 |
| Non-Additive Transcriptional Profiles Underlie Dikaryotic Superiority in Pleurotus ostreatus Laccase Activity R Castanera, A Omarini, F Santoyo, G Pérez, AG Pisabarro, L Ramírez PLoS One 8 (9), e73282, 2013 | 26 | 2013 |
| Genomics and transcriptomics characterization of genes expressed during postharvest at 4 C by the edible basidiomycete Pleurotus ostreatus L Ramírez, JA Oguiza, G Pérez, JL Lavín, A Omarini, F Santoyo, M Alfaro, ... Int. microbiol 14, 111-120, 2011 | 25 | 2011 |
| Transposons are important contributors to gene expression variability under selection in rice populations R Castanera, N Morales-Díaz, S Gupta, M Purugganan, JM Casacuberta elife 12, RP86324, 2023 | 22 | 2023 |
| Transposon-associated epigenetic silencing during Pleurotus ostreatus life cycle A Borgognone, R Castanera, M Morselli, L Lopez-Varas, L Rubbi, ... DNA Research 25 (5), 451-464, 2018 | 22 | 2018 |
| T-lex3: an accurate tool to genotype and estimate population frequencies of transposable elements using the latest short-read whole genome sequencing data M Bogaerts-Márquez, MG Barron, AS Fiston-Lavier, P Vendrell-Mir, ... Bioinformatics 36 (4), 1191-1197, 2020 | 16 | 2020 |
