| An amplicon-based sequencing framework for accurately measuring intrahost virus diversity using PrimalSeq and iVar ND Grubaugh, K Gangavarapu, J Quick, NL Matteson, JG De Jesus, ... Genome biology 20, 1-19, 2019 | 933 | 2019 |
| Adaptive introgression in an African malaria mosquito coincident with the increased usage of insecticide-treated bed nets LC Norris, BJ Main, Y Lee, TC Collier, A Fofana, AJ Cornel, GC Lanzaro Proceedings of the National Academy of Sciences 112 (3), 815-820, 2015 | 260 | 2015 |
| Spatiotemporal dynamics of gene flow and hybrid fitness between the M and S forms of the malaria mosquito, Anopheles gambiae Y Lee, CD Marsden, LC Norris, TC Collier, BJ Main, A Fofana, AJ Cornel, ... Proceedings of the National Academy of Sciences 110 (49), 19854-19859, 2013 | 127 | 2013 |
| Regulatory Divergence in Drosophila melanogaster and D. simulans, a Genomewide Analysis of Allele-Specific Expression RM Graze, LM McIntyre, BJ Main, ML Wayne, SV Nuzhdin Genetics 183 (2), 547-561, 2009 | 113 | 2009 |
| The Genetic Basis of Host Preference and Resting Behavior in the Major African Malaria Vector, Anopheles arabiensis BJ Main, Y Lee, HM Ferguson, KS Kreppel, A Kihonda, NJ Govella, ... PLoS Genetics 12 (9), e1006303, 2016 | 100 | 2016 |
| Impact of temperature on the extrinsic incubation period of Zika virus in Aedes aegypti OC Winokur, BJ Main, J Nicholson, CM Barker PLoS neglected tropical diseases 14 (3), e0008047, 2020 | 97 | 2020 |
| Emergence of behavioural avoidance strategies of malaria vectors in areas of high LLIN coverage in Tanzania KS Kreppel, M Viana, BJ Main, PCD Johnson, NJ Govella, Y Lee, D Maliti, ... Scientific reports 10 (1), 14527, 2020 | 85 | 2020 |
| Vector competence of Aedes aegypti, Culex tarsalis, and Culex quinquefasciatus from California for Zika virus BJ Main, J Nicholson, OC Winokur, C Steiner, KK Riemersma, J Stuart, ... PLoS neglected tropical diseases 12 (6), e0006524, 2018 | 66 | 2018 |
| GBshape: a genome browser database for DNA shape annotations TP Chiu, L Yang, T Zhou, BJ Main, SCJ Parker, SV Nuzhdin, TD Tullius, ... Nucleic acids research 43 (D1), D103-D109, 2015 | 66 | 2015 |
| Allele-specific expression assays using Solexa BJ Main, RD Bickel, LM McIntyre, RM Graze, PP Calabrese, SV Nuzhdin BMC genomics 10, 1-9, 2009 | 59 | 2009 |
| Complex genome evolution in Anopheles coluzzii associated with increased insecticide usage in Mali BJ Main, Y Lee, TC Collier, LC Norris, K Brisco, A Fofana, AJ Cornel, ... Molecular ecology 24 (20), 5145-5157, 2015 | 55 | 2015 |
| Investigating associations between biting time in the malaria vector Anopheles arabiensis Patton and single nucleotide polymorphisms in circadian clock genes: support for … DV Maliti, CD Marsden, BJ Main, NJ Govella, Y Yamasaki, TC Collier, ... Parasites & Vectors 9, 1-15, 2016 | 41 | 2016 |
| Genetic variation associated with increased insecticide resistance in the malaria mosquito, Anopheles coluzzii BJ Main, A Everitt, AJ Cornel, F Hormozdiari, GC Lanzaro Parasites & vectors 11, 1-9, 2018 | 39 | 2018 |
| Transcription Start Site Evolution in Drosophila BJ Main, AD Smith, H Jang, SV Nuzhdin Molecular biology and evolution 30 (8), 1966-1974, 2013 | 35 | 2013 |
| Salinity Adaptation and the Contribution of Parental Environmental Effects in Medicago truncatula KS Moriuchi, ML Friesen, MA Cordeiro, M Badri, WT Vu, BJ Main, ... PLoS One 11 (3), e0150350, 2016 | 29 | 2016 |
| The fate of genes that cross species boundaries after a major hybridization event in a natural mosquito population MJ Hanemaaijer, TC Collier, A Chang, CC Shott, PD Houston, H Schmidt, ... Molecular Ecology 27 (24), 4978-4990, 2018 | 28 | 2018 |
| Improved tools for genomic DNA library construction of small insects YK Yamasaki, CC Nieman, AN Chang, TC Collier, BJ Main, Y Lee F1000Res 5 (211), 10.7490, 2016 | 23 | 2016 |
| Characterization of the complete mitogenome of Anopheles aquasalis, and phylogenetic divergences among Anopheles from diverse geographic zones L Martinez-Villegas, J Assis-Geraldo, LB Koerich, TC Collier, Y Lee, ... PLoS One 14 (9), e0219523, 2019 | 21 | 2019 |
| Whole-genome assembly of Culex tarsalis BJ Main, M Marcantonio, JS Johnston, JL Rasgon, CT Brown, CM Barker G3 11 (2), jkaa063, 2021 | 20 | 2021 |
| Evidence for Divergent Selection on Immune Genes between the African Malaria Vectors, Anopheles coluzzii and A. gambiae Y Lee, L Souvannaseng, TC Collier, BJ Main, LC Norris, A Fofana, ... Insects 11 (12), 893, 2020 | 4 | 2020 |