| Single-cell transcriptomic analysis of Alzheimer’s disease H Mathys, J Davila-Velderrain, Z Peng, F Gao, S Mohammadi, JZ Young, ... Nature 570 (7761), 332-337, 2019 | 2091 | 2019 |
| Association studies of up to 1.2 million individuals yield new insights into the genetic etiology of tobacco and alcohol use M Liu, Y Jiang, R Wedow, 23andMe Research Team Nat Genet 51 (2), 237-244, 2019 | 1746 | 2019 |
| Expanded encyclopaedias of DNA elements in the human and mouse genomes JE Moore, MJ Purcaro, HE Pratt, CB Epstein, N Shoresh, J Adrian, T Kawli, ... Nature 583 (7818), 699-710, 2020 | 1532 | 2020 |
| APOE4 impairs myelination via cholesterol dysregulation in oligodendrocytes JW Blanchard, LA Akay, J Davila-Velderrain, D von Maydell, H Mathys, ... Nature 611 (7937), 769-779, 2022 | 288 | 2022 |
| Single-cell transcriptomic atlas of the human retina identifies cell types associated with age-related macular degeneration M Menon, S Mohammadi, J Davila-Velderrain, BA Goods, TD Cadwell, ... Nature communications 10 (1), 4902, 2019 | 262 | 2019 |
| Reconstruction of the human blood–brain barrier in vitro reveals a pathogenic mechanism of APOE4 in pericytes JW Blanchard, M Bula, J Davila-Velderrain, LA Akay, L Zhu, A Frank, ... Nature medicine 26 (6), 952-963, 2020 | 240 | 2020 |
| Cell type-specific transcriptomics reveals that mutant huntingtin leads to mitochondrial RNA release and neuronal innate immune activation H Lee, RJ Fenster, SS Pineda, WS Gibbs, S Mohammadi, ... Neuron 107 (5), 891-908. e8, 2020 | 198 | 2020 |
| Mapping the epigenomic and transcriptomic interplay during memory formation and recall in the hippocampal engram ensemble A Marco, HS Meharena, V Dileep, RM Raju, J Davila-Velderrain, ... Nature neuroscience 23 (12), 1606-1617, 2020 | 137 | 2020 |
| Perspectives on ENCODE MP Snyder, TR Gingeras, JE Moore, Z Weng, MB Gerstein, B Ren, ... Nature 583 (7818), 693-698, 2020 | 112 | 2020 |
| NEBULA is a fast negative binomial mixed model for differential or co-expression analysis of large-scale multi-subject single-cell data L He, J Davila-Velderrain, TS Sumida, DA Hafler, M Kellis, AM Kulminski Communications biology 4 (1), 629, 2021 | 104 | 2021 |
| Modeling the epigenetic attractors landscape: toward a post-genomic mechanistic understanding of development J Davila-Velderrain, JC Martinez-Garcia, ER Alvarez-Buylla Frontiers in genetics 6, 160, 2015 | 88 | 2015 |
| Inferring multimodal latent topics from electronic health records Y Li, P Nair, XH Lu, Z Wen, Y Wang, AAK Dehaghi, Y Miao, W Liu, ... Nature communications 11 (1), 2536, 2020 | 78 | 2020 |
| MEF2 is a key regulator of cognitive potential and confers resilience to neurodegeneration SJ Barker, RM Raju, NEP Milman, J Wang, J Davila-Velderrain, ... Science translational medicine 13 (618), eabd7695, 2021 | 70 | 2021 |
| XAANTAL2 (AGL14) is an important component of the complex gene regulatory network that underlies Arabidopsis shoot apical meristem transitions RV Pérez-Ruiz, B García-Ponce, N Marsch-Martínez, ... Molecular plant 8 (5), 796-813, 2015 | 70 | 2015 |
| Reconstruction of cell-type-specific interactomes at single-cell resolution S Mohammadi, J Davila-Velderrain, M Kellis Cell systems 9 (6), 559-568. e4, 2019 | 67 | 2019 |
| Single-cell dissection of schizophrenia reveals neurodevelopmental-synaptic axis and transcriptional resilience WB Ruzicka, S Mohammadi, J Davila-Velderrain, S Subburaju, DR Tso, ... MedRxiv, 2020.11. 06.20225342, 2020 | 62 | 2020 |
| Pervasive presence of transgenes and glyphosate in maize-derived food in Mexico E González-Ortega, A Piñeyro-Nelson, E Gómez-Hernández, ... Agroecology and sustainable food systems 41 (9-10), 1146-1161, 2017 | 61 | 2017 |
| A multiresolution framework to characterize single-cell state landscapes S Mohammadi, J Davila-Velderrain, M Kellis Nature communications 11 (1), 5399, 2020 | 59* | 2020 |
| Neurons burdened by DNA double-strand breaks incite microglia activation through antiviral-like signaling in neurodegeneration GM Welch, CA Boix, E Schmauch, J Davila-Velderrain, MB Victor, ... Science Advances 8 (39), eabo4662, 2022 | 53 | 2022 |
| BACE-1 inhibition facilitates the transition from homeostatic microglia to DAM-1 N Singh, MR Benoit, J Zhou, B Das, J Davila-Velderrain, M Kellis, LH Tsai, ... Science Advances 8 (24), eabo1286, 2022 | 48 | 2022 |