| Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm H Cheng, GT Concepcion, X Feng, H Zhang, H Li Nature methods 18 (2), 170-175, 2021 | 3330 | 2021 |
| A draft human pangenome reference WW Liao, M Asri, J Ebler, D Doerr, M Haukness, G Hickey, S Lu, JK Lucas, ... Nature 617 (7960), 312-324, 2023 | 606 | 2023 |
| The design and construction of reference pangenome graphs with minigraph H Li, X Feng, C Chu Genome biology 21, 1-19, 2020 | 342 | 2020 |
| Metagenome assembly of high-fidelity long reads with hifiasm-meta X Feng, H Cheng, D Portik, H Li Nature Methods 19 (6), 671-674, 2022 | 122 | 2022 |
| Association of germline variants in natural killer cells with tumor immune microenvironment subtypes, tumor-infiltrating lymphocytes, immunotherapy response, clinical outcomes … X Xu, J Li, J Zou, X Feng, C Zhang, R Zheng, W Duanmu, A Saha-Mandal, ... JAMA network open 2 (9), e199292-e199292, 2019 | 46 | 2019 |
| Germline genomic patterns are associated with cancer risk, oncogenic pathways, and clinical outcomes X Xu, Y Zhou, X Feng, X Li, M Asad, D Li, B Liao, J Li, Q Cui, E Wang Science advances 6 (48), eaba4905, 2020 | 17 | 2020 |
| Higher rates of processed pseudogene acquisition in humans and three great apes revealed by long-read assemblies X Feng, H Li Molecular Biology and Evolution 38 (7), 2958-2966, 2021 | 16 | 2021 |
| Evaluating and improving the representation of bacterial contents in long-read metagenome assemblies X Feng, H Li Genome Biology 25 (1), 92, 2024 | 3 | 2024 |
| Evaluation of haplotype-aware long-read error correction with hifieval Y Guo, X Feng, H Li Bioinformatics 39 (10), btad631, 2023 | 3 | 2023 |
| Highly accurate metagenome-assembled genomes from human gut microbiota using long-read assembly, binning, and consolidation methods DM Portik, X Feng, G Benoit, DJ Nasko, B Auch, SJ Bryson, R Cano, ... bioRxiv, 2024.05. 10.593587, 2024 | 2 | 2024 |
| ntsm: an alignment-free, ultra-low-coverage, sequencing technology agnostic, intraspecies sample comparison tool for sample swap detection J Chu, J Rong, X Feng, H Li GigaScience 13, giae024, 2024 | | 2024 |
