| trRosettaRNA: automated prediction of RNA 3D structure with transformer network W Wang, C Feng, R Han, Z Wang, L Ye, Z Du, H Wei, F Zhang, Z Peng, ... Nature Communications 14 (1), 7266, 2023 | 81 | 2023 |
| Integrating end-to-end learning with deep geometrical potentials for ab initio RNA structure prediction Y Li, C Zhang, C Feng, R Pearce, P Lydia Freddolino, Y Zhang Nature Communications 14 (1), 5745, 2023 | 52 | 2023 |
| Predicting 3D structure and stability of RNA pseudoknots in monovalent and divalent ion solutions YZ Shi, L Jin, CJ Feng, YL Tan, ZJ Tan PLOS Computational Biology 14 (6), e1006222, 2018 | 38 | 2018 |
| Modeling structure, stability, and flexibility of double-stranded RNAs in salt solutions L Jin, YZ Shi, CJ Feng, YL Tan, ZJ Tan Biophysical Journal 115 (8), 1403-1416, 2018 | 26 | 2018 |
| What is the best reference state for building statistical potentials in RNA 3D structure evaluation? YL Tan, CJ Feng, L Jin, YZ Shi, W Zhang, ZJ Tan RNA 25 (7), 793-812, 2019 | 22 | 2019 |
| Accurate de novo prediction of RNA 3D structure with transformer network C Feng, W Wang, R Han, Z Wang, L Ye, Z Du, H Wei, F Zhang, Z Peng, ... BioRxiv, 2022.10. 24.513506, 2022 | 14 | 2022 |
| Accurate prediction of protein structural flexibility by deep learning integrating intricate atomic structures and Cryo-EM density information X Song, L Bao, C Feng, Q Huang, F Zhang, X Gao, R Han Nature Communications 15 (1), 5538, 2024 | 13 | 2024 |
| Salt-dependent RNA pseudoknot stability: effect of spatial confinement C Feng, YL Tan, YX Cheng, YZ Shi, ZJ Tan Frontiers in Molecular Biosciences 8, 666369, 2021 | 12 | 2021 |
| Statistical potentials for 3D structure evaluation: from proteins to RNAs YL Tan, CJ Feng, X Wang, W Zhang, ZJ Tan Chinese Physics B 30 (2), 028705, 2021 | 9 | 2021 |
| Accurate global and local 3D alignment of cryo-EM density maps using local spatial structural features B He, F Zhang, C Feng, J Yang, X Gao, R Han Nature Communications 15 (1), 1593, 2024 | 6 | 2024 |
| FP-Zernike: an open-source structural database construction toolkit for fast structure retrieval J Qi, C Feng, Y Shi, J Yang, F Zhang, G Li, R Han Genomics, Proteomics & Bioinformatics 22 (1), 2024 | | 2024 |
| CryoAlign: feature-based method for global and local 3D alignment of EM density maps B He, F Zhang, C Feng, J Yang, X Gao, R Han arXiv preprint arXiv:2309.09217, 2023 | | 2023 |
| PGAR-Zernike: an ultra-fast, accurate and fully open-source structure retrieval toolkit for convenient structural database construction J Qi, C Feng, Y Shi, J Yang, F zhang, G Li, R Han bioRxiv, 2023.03. 18.533250, 2023 | | 2023 |
| Coarse-grained modeling for structure, stability and flexibility of double stranded RNAs in salt solutions L Jin, YZ Shi, CJ Feng, YL Tan, ZJ Tan bioRxiv, 332676, 2018 | | 2018 |
| Accurate global and local 3D alignment of cryo-EM density maps B He, F Zhang, C Feng, J Yang, X Gao, R Han | | |
