| The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2022 update Nucleic Acids Research 50 (W1), W345-W351, 2022 | 441 | 2022 |
| A proteomics sample metadata representation for multiomics integration and big data analysis C Dai, A Füllgrabe, J Pfeuffer, EM Solovyeva, J Deng, P Moreno, ... Nature Communications 12 (1), 5854, 2021 | 79 | 2021 |
| The Galaxy platform for accessible, reproducible, and collaborative data analyses: 2024 update Nucleic Acids Research, gkae410, 2024 | 74 | 2024 |
| Galaxy Training: A powerful framework for teaching! S Hiltemann, H Rasche, S Gladman, HR Hotz, D Larivière, D Blankenberg, ... PLOS Computational Biology 19 (1), e1010752, 2023 | 69 | 2023 |
| Reproducible proteomics sample preparation for single FFPE tissue slices using acid-labile surfactant and direct trypsinization MC Föll, M Fahrner, VO Oria, M Kühs, ML Biniossek, M Werner, ... Clinical Proteomics 15, 1-15, 2018 | 60 | 2018 |
| Identification of tissue damage, extracellular matrix remodeling and bacterial challenge as common mechanisms associated with high-risk cutaneous squamous cell carcinomas MC Föll, M Fahrner, C Gretzmeier, K Thoma, ML Biniossek, D Kiritsi, ... Matrix Biology 66, 1-21, 2018 | 45 | 2018 |
| Accessible and reproducible mass spectrometry imaging data analysis in Galaxy MC Föll, L Moritz, T Wollmann, MN Stillger, N Vockert, M Werner, ... Gigascience 8 (12), giz143, 2019 | 37 | 2019 |
| Proteome profiling of primary pancreatic ductal adenocarcinomas undergoing additive chemoradiation link ALDH1A1 to early local recurrence and chemoradiation resistance VO Oria, P Bronsert, AR Thomsen, MC Föll, C Zamboglou, L Hannibal, ... Translational oncology 11 (6), 1307-1322, 2018 | 25 | 2018 |
| Proteomic characterization of prostate cancer to distinguish nonmetastasizing and metastasizing primary tumors and lymph node metastases AK Müller, M Föll, B Heckelmann, S Kiefer, M Werner, O Schilling, ... Neoplasia 20 (2), 140-151, 2018 | 25 | 2018 |
| Deep multiple instance learning classifies subtissue locations in mass spectrometry images from tissue-level annotations D Guo, MC Föll, V Volkmann, K Enderle-Ammour, P Bronsert, O Schilling, ... Bioinformatics 36 (Supplement_1), i300-i308, 2020 | 21 | 2020 |
| Cardinal v. 3: a versatile open-source software for mass spectrometry imaging analysis KA Bemis, MC Föll, D Guo, SS Lakkimsetty, O Vitek Nature Methods 20 (12), 1883-1886, 2023 | 20 | 2023 |
| Moving translational mass spectrometry imaging towards transparent and reproducible data analyses: A case study of an urothelial cancer cohort analyzed in the Galaxy framework MC Föll, V Volkmann, K Enderle-Ammour, S Timme, K Wilhelm, D Guo, ... Clinical Proteomics 19 (1), 8, 2022 | 17 | 2022 |
| Fostering accessible online education using Galaxy as an e-learning platform B Serrano-Solano, MC Föll, C Gallardo-Alba, A Erxleben, H Rasche, ... PLoS computational biology 17 (5), e1008923, 2021 | 17 | 2021 |
| Proteome alterations in human autopsy tissues in relation to time after death É Kocsmár, M Schmid, M Cosenza-Contreras, I Kocsmár, M Föll, L Krey, ... Cellular and Molecular Life Sciences 80 (5), 117, 2023 | 14 | 2023 |
| MaxQuant and MSstats in Galaxy enable reproducible cloud-based analysis of quantitative proteomics experiments for everyone N Pinter, D Glätzer, M Fahrner, K Fröhlich, J Johnson, BA Grüning, ... Journal of Proteome Research 21 (6), 1558-1565, 2022 | 14 | 2022 |
| Democratizing data-independent acquisition proteomics analysis on public cloud infrastructures via the Galaxy framework M Fahrner, MC Föll, BA Grüning, M Bernt, H Röst, O Schilling GigaScience 11, giac005, 2022 | 13 | 2022 |
| A Galaxy of informatics resources for MS-based proteomics S Mehta, M Bernt, M Chambers, M Fahrner, MC Föll, B Gruening, C Horro, ... Expert Review of Proteomics 20 (11), 251-266, 2023 | 10 | 2023 |
| Proteometabolomics of initial and recurrent glioblastoma highlights an increased immune cell signature with altered lipid metabolism M Cosenza-Contreras, A Schäfer, J Sing, L Cook, MN Stillger, CY Chen, ... Neuro-oncology 26 (3), 488-502, 2024 | 8 | 2024 |
| Advancing rare cancer research by MALDI mass spectrometry imaging: Applications, challenges, and future perspectives in sarcoma MN Stillger, MJ Li, P Hönscheid, C von Neubeck, MC Föll Proteomics, 2300001, 2024 | 8 | 2024 |
| Characterization of Spatial Heterogeneity in Metastasized Colorectal Cancer by MALDI Imaging L Moritz, MN Stillger, F Takács, H Füllgraf, M Werner, S Fichtner-Feigl, ... Preprints, 2023 | 3 | 2023 |