| MicroRNA-small molecule association identification: from experimental results to computational models X Chen, NN Guan, YZ Sun, JQ Li, J Qu Briefings in bioinformatics 21 (1), 47-61, 2020 | 169 | 2020 |
| Computational models for lncRNA function prediction and functional similarity calculation X Chen, YZ Sun, NN Guan, J Qu, ZA Huang, ZX Zhu, JQ Li Briefings in functional genomics 18 (1), 58-82, 2019 | 147 | 2019 |
| MDAD: a special resource for microbe-drug associations YZ Sun, DH Zhang, SB Cai, Z Ming, JQ Li, X Chen Frontiers in cellular and infection microbiology 8, 424, 2018 | 93 | 2018 |
| RNA methylation and diseases: experimental results, databases, Web servers and computational models X Chen, YZ Sun, H Liu, L Zhang, JQ Li, J Meng Briefings in bioinformatics 20 (3), 896-917, 2019 | 88 | 2019 |
| Inferring potential small molecule–miRNA association based on triple layer heterogeneous network J Qu, X Chen, YZ Sun, JQ Li, Z Ming Journal of cheminformatics 10, 1-14, 2018 | 76 | 2018 |
| In Silico prediction of small molecule-miRNA associations based on the HeteSim algorithm J Qu, X Chen, YZ Sun, Y Zhao, SB Cai, Z Ming, ZH You, JQ Li Molecular Therapy-Nucleic Acids 14, 274-286, 2019 | 61 | 2019 |
| NRDTD: a database for clinically or experimentally supported non-coding RNAs and drug targets associations X Chen, YZ Sun, DH Zhang, JQ Li, GY Yan, JY An, ZH You Database 2017, bax057, 2017 | 58 | 2017 |
| RFSMMA: a new computational model to identify and prioritize potential small molecule–mirna associations CC Wang, X Chen, J Qu, YZ Sun, JQ Li Journal of chemical information and modeling 59 (4), 1668-1679, 2019 | 49 | 2019 |
| Prediction of potential small molecule-associated microRNAs using graphlet interaction NN Guan, YZ Sun, Z Ming, JQ Li, X Chen Frontiers in pharmacology 9, 1152, 2018 | 45 | 2018 |
| Prediction of small molecule–microRNA associations by sparse learning and heterogeneous graph inference J Yin, X Chen, CC Wang, Y Zhao, YZ Sun Molecular pharmaceutics 16 (7), 3157-3166, 2019 | 41 | 2019 |
| RNA-splicing factor SART3 regulates translesion DNA synthesis M Huang, B Zhou, J Gong, L Xing, X Ma, F Wang, W Wu, H Shen, C Sun, ... Nucleic acids research 46 (9), 4560-4574, 2018 | 37 | 2018 |
| DLREFD: a database providing associations of long non-coding RNAs, environmental factors and phenotypes YZ Sun, DH Zhang, Z Ming, JQ Li, X Chen Database 2017, bax084, 2017 | 12 | 2017 |
| Single-cell sequencing highlights heterogeneity and malignant progression in actinic keratosis and cutaneous squamous cell carcinoma DD Zou, YZ Sun, XJ Li, WJ Wu, D Xu, YT He, J Qi, Y Tu, Y Tang, YH Tu, ... Elife 12, e85270, 2023 | 11 | 2023 |
| Using ultra-sensitive next generation sequencing to dissect DNA damage-induced mutagenesis K Wang, X Ma, X Zhang, D Wu, C Sun, Y Sun, X Lu, CI Wu, C Guo, J Ruan Scientific reports 6 (1), 25310, 2016 | 11 | 2016 |
| iTRAQ-based chromatin proteomic screen reveals CHD4-dependent recruitment of MBD2 to sites of DNA damage Y Sun, Y Yang, H Shen, M Huang, Z Wang, Y Liu, H Zhang, TS Tang, ... Biochemical and biophysical research communications 471 (1), 142-148, 2016 | 11 | 2016 |
| An exploration of the tumor microenvironment identified a novel five-gene model for predicting outcomes in bladder cancer X Li, J Feng, Y Sun, X Li Frontiers in Oncology 11, 642527, 2021 | 6 | 2021 |
| RANKL/RANK signaling recruits Tregs via the CCL20–CCR6 pathway and promotes stemness and metastasis in colorectal cancer J Ouyang, S Hu, Q Zhu, C Li, T Kang, W Xie, Y Wang, Y Li, Y Lu, J Qi, ... Cell Death & Disease 15 (6), 437, 2024 | 4 | 2024 |
| Pan-cancer analysis revealed H3K4me1 at bivalent promoters premarks DNA hypermethylation during tumor development and identified the regulatory role of DNA methylation in … Y Lu, Q Cao, Y Yu, Y Sun, X Jiang, X Li BMC genomics 24 (1), 235, 2023 | 4 | 2023 |
| Epigenetic and transcriptional landscapes during cerebral cortex development in a microcephaly mouse model Q Yang, Q Cao, Y Yu, X Lai, J Feng, X Li, Y Jiang, Y Sun, ZW Zhou, X Li Journal of Genetics and Genomics 51 (4), 419-432, 2024 | 2 | 2024 |
| m6A Topological Transition Coupled to Developmental Regulation of Gene Expression During Mammalian Tissue Development S Li, Q Yang, R Jiao, P Xu, Y Sun, X Li Frontiers in Cell and Developmental Biology 10, 916423, 2022 | | 2022 |