| Enhanced clearance of HIV-1–infected cells by broadly neutralizing antibodies against HIV-1 in vivo CL Lu, DK Murakowski, S Bournazos, T Schoofs, D Sarkar, ... Science 352 (6288), 1001-1004, 2016 | 382 | 2016 |
| Bacterial colonization reprograms the neonatal gut metabolome K Bittinger, C Zhao, Y Li, E Ford, ES Friedman, J Ni, CV Kulkarni, J Cai, ... Nature microbiology 5 (6), 838-847, 2020 | 106 | 2020 |
| A diurnal flux balance model of Synechocystis sp. PCC 6803 metabolism D Sarkar, TJ Mueller, D Liu, HB Pakrasi, CD Maranas PLoS computational biology 15 (1), e1006692, 2019 | 43 | 2019 |
| Recent advances in constraint and machine learning-based metabolic modeling by leveraging stoichiometric balances, thermodynamic feasibility and kinetic law formalisms PF Suthers, CJ Foster, D Sarkar, L Wang, CD Maranas Metabolic engineering 63, 13-33, 2021 | 38 | 2021 |
| SNPeffect: identifying functional roles of SNPs using metabolic networks D Sarkar, CD Maranas The Plant Journal 103 (2), 512-531, 2020 | 27 | 2020 |
| Dissecting the metabolic reprogramming of maize root under nitrogen-deficient stress conditions NB Chowdhury, WL Schroeder, D Sarkar, N Amiour, I Quilleré, B Hirel, ... Journal of Experimental Botany 73 (1), 275-291, 2022 | 23 | 2022 |
| Quantifying the propagation of parametric uncertainty on flux balance analysis HV Dinh, D Sarkar, CD Maranas Metabolic engineering 69, 26-39, 2022 | 21 | 2022 |
| Elucidation of trophic interactions in an unusual single-cell nitrogen-fixing symbiosis using metabolic modeling D Sarkar, M Landa, A Bandyopadhyay, HB Pakrasi, JP Zehr, CD Maranas PLOS Computational Biology 17 (5), e1008983, 2021 | 19 | 2021 |
| A genome-scale metabolic model of Anabaena 33047 to guide genetic modifications to overproduce nylon monomers JI Hendry, HV Dinh, D Sarkar, L Wang, A Bandyopadhyay, HB Pakrasi, ... Metabolites 11 (3), 168, 2021 | 7 | 2021 |
| Engineering microbial chemical factories using metabolic models D Sarkar, CD Maranas BMC Chemical Engineering 1 (1), 1-11, 2019 | 7 | 2019 |
| The within-host fitness of HIV-1 increases with age in ART-naïve HIV-1 subtype C infected children P Nagaraja, BP Gopalan, RR D’Souza, D Sarkar, N Rajnala, NM Dixit, ... Scientific reports 11 (1), 1-10, 2021 | 4 | 2021 |
| Modeling plant metabolism: advancements and future capabilities MN Simons-Senftle, D Sarkar, CD Maranas Engineering Nitrogen Utilization in Crop Plants, 57-76, 2018 | 4 | 2018 |
| Integrated Modeling of Phototrophic Metabolism Leveraging Multi-Omics Datasets D Sarkar The Pennsylvania State University, 2022 | | 2022 |
| Metabolic modeling for the microbiome C Maranas, D Sarkar, J Chan | | 2022 |
| Computational redesign of Outer membrane protein F (OmpF) for capturing chemical warfare agent molecules VS Boorla, D Sarkar, S Ghaffari, R Chowdhury, CD Maranas COMPUTATIONAL REDESIGN OF ENZYMES AND CHANNEL PROTEINS, 27, 2021 | | 2021 |
| Incorporating Stability Score into Iterative Protein Redesign and Optimization Suite of Programs (IPRO) S Ghaffari, D Sarkar, R Chowdhury, CD Maranas COMPUTATIONAL REDESIGN OF ENZYMES AND CHANNEL PROTEINS, 42, 2021 | | 2021 |
| A Genome-Scale Metabolic Model of Anabaena 33047 to Guide Genetic Modifications to Overproduce Nylon Monomers. Metabolites 2021, 11, 168 JI Hendry, HV Dinh, D Sarkar, L Wang, A Bandyopadhyay, HB Pakrasi, ... s Note: MDPI stays neutral with regard to jurisdictional claims in published …, 2021 | | 2021 |
| Dissecting the Metabolic Reprogramming of Maize Root under Nitrogen Limiting Stress Condition NB Chowdhury, WL Schroeder, D Sarkar, N Amiour, I Quillere, B Hirel, ... bioRxiv, 2021 | | 2021 |
| Looking Beyond GWAS: Identifying Functional Roles of SNPs Using Metabolic Networks in Arabidopsis and Populus D Sarkar, C Maranas 2019 AIChE Annual Meeting, 2019 | | 2019 |
| Identifying functional roles of SNPs using metabolic networks for improved plant breeding C Maranas, D Sarkar | | 2019 |