| Challenges and promise at the interface of metaproteomics and genomics: an overview of recent progress in metaproteogenomic data analysis H Schiebenhoefer, T Van Den Bossche, S Fuchs, BY Renard, T Muth, ... Expert Review of Proteomics 16 (5), 375-390, 2019 | 97 | 2019 |
| Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows T Van Den Bossche, BJ Kunath, K Schallert, SS Schäpe, PE Abraham, ... Nature communications 12 (1), 7305, 2021 | 91* | 2021 |
| The Metaproteomics Initiative: a coordinated approach for propelling the functional characterization of microbiomes T Van Den Bossche, MØ Arntzen, D Becher, D Benndorf, VGH Eijsink, ... Microbiome 9 (1), 243, 2021 | 77* | 2021 |
| A proteomics sample metadata representation for multiomics integration and big data analysis C Dai, A Füllgrabe, J Pfeuffer, EM Solovyeva, J Deng, P Moreno, ... Nature Communications 12 (1), 5854, 2021 | 76 | 2021 |
| Universal Spectrum Identifier for mass spectra EW Deutsch, Y Perez-Riverol, J Carver, S Kawano, L Mendoza, ... Nature methods 18 (7), 768-770, 2021 | 71 | 2021 |
| The age of data‐driven proteomics: how machine learning enables novel workflows R Bouwmeester, R Gabriels, T Van Den Bossche, L Martens, S Degroeve Proteomics 20 (21-22), 1900351, 2020 | 53 | 2020 |
| Cov-MS: a community-based template assay for mass-spectrometry-based protein detection in SARS-CoV-2 patients B Van Puyvelde, K Van Uytfanghe, O Tytgat, L Van Oudenhove, ... Jacs Au 1 (6), 750-765, 2021 | 41 | 2021 |
| Proteomics standards initiative extended FASTA format PA Binz, J Shofstahl, JA Vizcaíno, H Barsnes, RJ Chalkley, G Menschaert, ... Journal of proteome research 18 (6), 2686-2692, 2019 | 37 | 2019 |
| Unipept Desktop: A Faster, More Powerful Metaproteomics Results Analysis Tool P Verschaffelt, T Van Den Bossche, L Martens, P Dawyndt, B Mesuere Journal of Proteome Research 20 (4), 2005-2009, 2021 | 34 | 2021 |
| Proteomics standards initiative at twenty years: current activities and future work EW Deutsch, JA Vizcaíno, AR Jones, PA Binz, H Lam, J Klein, ... Journal of proteome research 22 (2), 287-301, 2023 | 30 | 2023 |
| Proteomics Standards Initiatives ProForma 2.0 Unifying the encoding of Proteoforms and Peptidoforms RD LeDuc, EW Deutsch, PA Binz, RT Fellers, AJ Cesnik, JA Klein, ... arXiv preprint arXiv:2109.11352, 2021 | 21 | 2021 |
| Connecting MetaProteomeAnalyzer and PeptideShaker to Unipept for seamless end-to-end metaproteomics data analysis T Van Den Bossche, P Verschaffelt, K Schallert, H Barsnes, P Dawyndt, ... Journal of proteome research 19 (8), 3562-3566, 2020 | 21 | 2020 |
| Pout2Prot: An Efficient Tool to Create Protein (Sub)groups from Percolator Output Files K Schallert, P Verschaffelt, B Mesuere, D Benndorf, L Martens, ... Journal of Proteome Research 21 (4), 1175-1180, 2022 | 19* | 2022 |
| MegaGO: A Fast Yet Powerful Approach to Assess Functional Gene Ontology Similarity across Meta-Omics Data Sets P Verschaffelt, T Van Den Bossche, W Gabriel, M Burdukiewicz, A Soggiu, ... Journal of Proteome Research 20 (4), 2083-2088, 2021 | 17 | 2021 |
| gNOMO: a multi-omics pipeline for integrated host and microbiome analysis of non-model organisms M Munoz-Benavent, F Hartkopf, T Van Den Bossche, VC Piro, ... NAR genomics and bioinformatics 2 (3), lqaa058, 2020 | 17 | 2020 |
| lesSDRF is more: maximizing the value of proteomics data through streamlined metadata annotation T Claeys, T Van Den Bossche, Y Perez-Riverol, K Gevaert, JA Vizcaíno, ... Nature Communications 14 (1), 6743, 2023 | 16 | 2023 |
| Unipept Desktop 2.0: construction of targeted reference protein databases for Metaproteogenomics analyses P Verschaffelt, A Tanca, M Abbondio, T Van Den Bossche, TV Moortele, ... Journal of Proteome Research 22 (8), 2620-2628, 2023 | 16 | 2023 |
| Unipept CLI 2.0: adding support for visualizations and functional annotations P Verschaffelt, P Van Thienen, T Van Den Bossche, F Van der Jeugt, ... Bioinformatics 36 (14), 4220-4221, 2020 | 16 | 2020 |
| Research culture: science from bench to society L Canti, A Chrzanowska, MG Doglio, L Martina, T Van Den Bossche Biology open 10 (8), bio058919, 2021 | 15 | 2021 |
| Extracellular vesicles in patients in the acute phase of psychosis and after clinical improvement: an explorative study ME Tunset, H Haslene-Hox, T Van Den Bossche, AE Vaaler, E Sulheim, ... PeerJ 8, e9714, 2020 | 8 | 2020 |
Lennart MartensSenior Full Professor of Systems Biology, Ghent University and VIB, Ghent, Belgium確認したメール アドレス: UGent.be
